Cottoperca gobio: 115018595
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Entry
115018595 CDS
T07513
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cgob
Cottoperca gobio
Pathway
cgob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115018595 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115018595 (pcf11)
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115018595 (pcf11)
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115018595 (pcf11)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115018595 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
SHOCT
POC1
Motif
Other DBs
NCBI-GeneID:
115018595
NCBI-ProteinID:
XP_029303510
Ensembl:
ENSCGOG00000003413
UniProt:
A0A6J2R291
LinkDB
All DBs
Position
14:25021137..25037972
Genome browser
AA seq
1600 aa
AA seq
DB search
MDCLLVNGYGTVKAAVGFPGSLSSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSIEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEAPSPQPAPSKPAPPPPPPAPAAQPPPAVSQSSLTQESLIRQQLLAKQKQLLEL
QQKKIELELEQTKAQLAGGFVMPTAAATPGSAAVKPGSQTASVVRPWVPPPMDAKPATRD
PRLNRSGSSGGPQPKEQTAGKKDGSATTGSPALTPEKPPRPDKARTPRKDASEEKPKTKP
PSPVVKSVPGKIKQAEAEIQKSADGLKKDPRLKKRPQDKSREAEELKEKKRCVDKKERVE
MARPADAQRAVKGKLVNGTTAKHERDESTEKPEFKTGGNARTHARKRTRSRSRSPTSSPK
RKDRRSPKSRTRSSSLSPSPSQKPGKPRRVRADEPDHGKPDHGKPVREDRLAPKKNQSEG
RRSKRPAEDRHAESRDSHSPRSHDGSKEAKEAPQRWRSGWEENKHPKLPEDSHVKPGPPR
HKPYGTPTRPSAPRTPKHRLSVDANMQIPEVLNTASKKDLLRRASKRLESGEISQEDFLN
MAHQIKHFFQYQEEKQHSDVWSDSADFPAKKPQQPACAQPRPSGAGMDAAELSYYEHKSK
LRKTQVTHRAAGEEWEGEDSPEEDEEVVPGENTVANTGAEHPPPHKYSRAPRERQGERRS
KESEEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPREPSEREWNSPLTERQRLSE
EQKSGYDAPRRYDSRHPDLRRPEVPAASGTVVHRNSPSPVAVEAPAPRFERERLPPLTQK
DSAEMSPIPRFESPNSEHSDDEPLGLDGPLPHPLPPPKSILKAPARVGPMASVHQHGDSP
GHTPPHDGGHPPQRYDGPVPMGPNRPHPPGWYEGGGPGRYDDSSRFDGPHHQGPGRFDGG
VPPHHNMPERFDGPHMSHGPMRGGDAIRRFDGPPHPQGPGRFDGQQPPVRFDGQGHFDGS
MQRFDAPRRFDGNMAPGSGPMGFQQQRPMRFDGPMRFDGPMRFESPVQPGPRFDIVPHQS
GPPLYECPPGQQGPMRFTPQHNMQPPMRQMAPSIYESSIAPQQSFNMAPQRFPEPMNPQF
PAGPMAFPAQPNLQPAGNFNMQPTPSFGQPAPTPFYNPAAPAVGMQQPVNMLGNLSQPFL
PQNSVPFVQQTPQGAPPENHFGQVDVNDLLSKLVSNGIIKPLQPDAAPTASAEPASTLPA
APPAVEEEEEEVEDDEDEDLPDLTGFKVDDMKQRYESVVTKLYSGNQCCLCSMRFTAAQT
DMYADHLDWHFRQNHAGKVASKKITHRRWYYGQRDWVEFEEMADLEERAKSTFFEKVNEE
EVQKSQAAAKEKEFQSVKATKDQVGELCEICQEPFETYWVEEEEDWFLKDAVRVDDKNFH
PACFEDYKNTSSYLDVTPSPNKLLTEHPLGAFIKREEEEEEGAGTSCAVAAAEAAAAEAA
AAEAAAAEAAAASVKQEVEASELPAVKEEQQEVLTEQNAE
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctggtcaatggttatggtaccgttaaggctgctgtaggtttcccgggc
tcgctcagctcaaagatggacgacaaagcggcgagggaagacgcctgccgggagtaccag
tcctctctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgctattattgaagcgcaaataagc
aaggccccatccatcgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacaccaggaagagtttgttcaagctgcgctccacgtgggac
gacgtgtttcctctgaagaagctgtacgcgctggacgtgcgggtcaactctgtggacccg
gcctggcccatcaagccgctgccgcccactgtgaacgccagcatccacgtcaacccaaag
tttttaaaacagtctgaggaggcgccctctccgcagcctgctccctctaaacctgcgccg
ccgccgcctcctccggcccccgctgcccagccgccccccgccgtcagccagtccagcctc
acacaggagtctctgatccgacagcagctgctggccaaacagaagcagctgctggagctg
cagcagaagaagatcgagctggagctggagcagaccaaagctcagctggcgggggggttt
gtgatgccgaccgcggcagcaactccgggctcagcggcggtgaagcccggcagccaaact
gcttccgtggtccgaccatgggtcccgcctccgatggacgccaagccggccaccagagac
ccccgcctgaaccgcagtggatcctcggggggcccccagcccaaagaacaaactgcagga
aagaaggacggctccgccacgacaggaagtcctgctctgacaccagagaaaccgccccgg
ccagacaaagccaggaccccgaggaaagacgcgtcagaggagaagcccaaaaccaagcct
ccgtctccggtggtcaaaagtgtcccgggaaaaatcaaacaggcggaggccgagatccag
aagtcagctgacggcctgaagaaagacccgcggctgaagaagcgcccgcaggacaagagt
cgagaggccgaggagctgaaggagaagaagcgctgcgtggacaagaaggaacgcgtggag
atggcccggccggccgacgctcagagggccgtgaaggggaagctggtgaacggcaccacg
gccaaacacgagcgcgacgagtccacggagaagcccgagttcaagacaggaggcaacgct
cgaacacacgccagaaaacgaacgcgctcgcggtcccgctcccccacctcctccccgaag
aggaaggaccggcggtcgcccaagagcagaacccggagcagctccctgtccccgtcgccc
tcccagaaacccggcaaacccaggagggtccgcgccgacgagccagaccacggcaagccc
gaccacggcaagcccgtccgcgaggaccggctcgcgcccaagaagaaccaatcggagggc
aggaggtcgaagaggccggcggaggatcgacacgccgagtccagagactctcactccccc
cggagccacgacggcagcaaggaggccaaggaggcgccgcagcgctggaggagcggctgg
gaggagaacaagcatccgaagctgccggaggactctcacgtgaagcccggtcctccgaga
cacaaaccgtacggcaccccgactcgcccctccgctccccgcaccccgaagcatcgcctc
agcgtggacgccaacatgcagatccccgaagtcctcaacacggcctccaagaaggacctt
ctccggagggccagtaagcgtctggagagcggcgagatttctcaggaggacttcctgaac
atggcgcaccagatcaaacacttcttccagtatcaggaggagaagcagcactcggacgtc
tggagcgactccgcagacttccccgccaagaaaccgcaacagcccgcctgtgctcagcct
cggcccagcggcgccggcatggacgcggcggagctgtcttactacgagcacaagtccaag
ctgaggaagactcaggtcacgcaccgggccgccggcgaggagtgggagggcgaggacagt
ccggaggaggacgaggaagttgtgccgggcgagaacacggtagcgaacacgggcgctgaa
cacccaccgccacataaatacagccgggcgccacgggagaggcaaggcgagcggcggagt
aaagagagcgaggagccgcggccgccgctcggccccatgatcgaggagtacaaccacggc
aaagagttcccgaccctgaagtctctgccgggtctccgcttcaggaggagagccgacccc
cgagagcccagtgagcgagagtggaactcgccgctgacggagcggcagcgtctgagcgag
gagcagaagagcggctacgacgctccccggaggtacgactcccgacaccccgacctgcgg
aggccggaggtaccggcggcctccggcacagtggtgcacaggaactccccgagcccggtt
gccgtggaggcgccggcgcccaggtttgaacgtgagcgcctgccgcctctgacccagaaa
gactcggcggagatgagtccgatccctcgcttcgagagccccaacagcgagcactctgac
gacgagcccctcggcctggatggccccctccctcaccccctccctcctcccaaatccatc
ctcaaggcgccggcccgcgtaggaccgatggcttctgtgcaccagcacggcgactccccg
ggacacacgccgcctcatgacggagggcaccccccgcagcggtatgatgggcccgtaccc
atgggccccaacagaccacaccctccggggtggtacgaaggcgggggccccgggcgctac
gatgactcgtctcgcttcgacgggccgcaccaccagggccccggcaggttcgacggtggc
gtgccgcctcatcacaacatgccagagaggttcgatgggccccacatgtctcatggtcca
atgagaggcggagacgctataaggcggttcgacgggcccccccaccctcagggcccgggg
aggttcgacggtcagcagccccccgtgaggtttgatggacagggacactttgacggctca
atgcagcgctttgatgcaccgcggcgctttgacggcaacatggctcctggctctggacca
atgggcttccagcagcagcggccgatgcgcttcgacggcccgatgaggttcgacggtccg
atgcgcttcgagtcgcccgtccagccgggaccccggtttgacatcgtgccccatcagagc
gggccgccgctctacgagtgcccccccggccagcagggccccatgaggtttactccccag
cacaacatgcagccccccatgaggcagatggccccgtcaatctacgagagttccatcgcc
ccccagcagagcttcaacatggccccccagcgcttcccggagcccatgaaccctcagttc
cccgcggggccgatggcgttcccggctcagccgaacctgcagccagccggaaacttcaac
atgcagccgacgccgtccttcggccagccggcccccacccccttctacaaccccgcggcc
cccgctgtgggcatgcagcagccggtgaacatgttggggaacctcagccagcccttcctg
cctcagaactcggtgcctttcgtgcagcagacgccgcagggcgcccctccagagaaccac
ttcggccaggttgacgtcaacgacctgctgtccaagctcgtctccaacggcatcatcaaa
cccttgcagcctgacgctgcgccgaccgccagcgctgaacctgcttccacgctgccagca
gctccgcctgcggtggaggaggaggaagaggaggtggaggatgacgaagatgaagacctc
ccagacctcaccggcttcaaagtggacgacatgaaacagcgctatgagagcgtggtcact
aagctgtactcggggaaccagtgctgcctgtgcagcatgaggttcaccgccgctcagacc
gacatgtacgccgaccacctggactggcacttcagacagaaccacgccggcaaggtggcc
agcaagaagatcacgcaccgccgctggtactacggccagagggactgggtggagttcgag
gagatggcagacctcgaagagcgagcgaagagcacgttcttcgagaaggtgaacgaggag
gaggtgcagaagagccaggcggccgccaaggagaaggagttccagagtgtgaaggccact
aaggaccaagtgggggagctgtgtgagatctgtcaggagccgtttgagacgtactgggtg
gaggaggaggaggactggttcctgaaagacgcagtgagggttgacgacaagaacttccat
cccgcctgtttcgaagactataaaaatacgtcttcgtacctcgacgtcacgccgtcgccc
aacaagctgctcactgaacacccgctaggcgccttcataaagagagaagaggaggaggag
gagggggccggcacttcctgtgctgttgccgctgccgaagctgccgccgccgaagctgcc
gccgccgaagctgccgccgccgaagctgccgccgcctcagtgaagcaggaagtggaggcg
agcgagcttcctgctgtgaaggaggagcagcaggaggttttaacggagcagaacgcagag
tga
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integrated database retrieval system
