Cottoperca gobio: 115021244
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Entry
115021244 CDS
T07513
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115021244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115021244
03036 Chromosome and associated proteins [BR:
cgob03036
]
115021244
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115021244
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115021244
mRNA degradation factors
5'-3' decay
Decapping complex
115021244
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115021244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
115021244
NCBI-ProteinID:
XP_029307384
Ensembl:
ENSCGOG00000011693
UniProt:
A0A6J2RAR3
LinkDB
All DBs
Position
16:4050146..4058913
Genome browser
AA seq
483 aa
AA seq
DB search
MATARTANPSPMIGLNKPANGQLRGPTGLLASAQQPSALQKRTGIPQSSGGIKFGDDWKK
CLELPPRDTRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQISIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKMDRAQLIVMDEADKLLSQ
DFVVLIEDIISFMPKDRQILLYSATFPISVQKFMSKHLKKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRYNLKNIEDQLVTDIKPIPSCIDKSLYVAEFHSVDPDAEDDDIEAGARNKEL
GGI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaaccgcaaacccgtcgccaatgattggattgaacaaaccagcaaat
gggcagctcagaggaccgacggggctccttgcgagtgcccaacagccgagtgccctccag
aaaaggacaggcattcctcaaagcagtgggggcatcaagtttggtgatgactggaagaaa
tgcctggagcttcctccgagagacaccaggatgagaacttcggatgtgacttcaactaag
ggaaatgaatttgaagactactgcctaaagcgtgaactgctaatgggaatctttgaaatg
ggatgggagaaaccgtctcctgtccaggaggaaagtatccccatcgctctgtcaggcaga
gatattttggctcgggcaaagaatggcacaggaaaaagtggagcctacctcatccctctc
ctggagagaatagacctgaagaaggatcacattcaggccatagtaatggtgccaacaaga
gagttggccctgcagatgagccagatcagcattcagctcagcaagcacctggggggagtc
aaggttatggctaccacaggtggcaccaacttgagggatgacatcatgcgtcttgatgag
acagtgcatgtagtgattgctacaccaggcaggatactagacctgatcaagaagggtgtg
gcaaaaatggacagagcccaactgattgtgatggatgaggcagataagctgctgtcccag
gactttgtggtcctgattgaagatataatcagcttcatgccaaaggatcgtcagatcctg
ctttactctgccactttccccatcagtgtgcaaaaattcatgagcaagcacctgaagaag
ccttatgagatcaacctgatggaggaactgaccttgaagggcatcactcagtactacgct
tacgtgactgaaagacagaaggtccactgtctcaacacactcttttctaggcttcagatc
aatcagtcgatcatcttctgtaactccacccagagggtcgagcttctggccaagaaaatc
acccaactgggatattcgtgcttctacattcatgcaaagatgatgcaggagtacaggaac
cgcgtgttccatgacttcaggaatggtttgtgcagaaacctggtctgcacagacttattc
actcggggaattgacatccaggcagtgaatgtggtcatcaactttgacttcccgaaaaat
gcagagacctacctgcatcgcattggcagatcagggcgttttggtcacctgggtctggcc
atcaatctgataacttcagaagaccgctacaacctcaagaatattgaggatcaactggtc
actgacattaagcccatccccagctgcatcgataagagcctgtatgtggcagagtttcac
tctgttgacccagatgctgaagacgacgacatcgaggccggagccagaaacaaggaactg
ggaggaatctga
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