Cottoperca gobio: 115021797
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Entry
115021797 CDS
T07513
Symbol
col6a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115021797 (col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115021797 (col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115021797 (col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115021797 (col6a6)
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115021797 (col6a6)
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115021797 (col6a6)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115021797 (col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
115021797 (col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
115021797
NCBI-ProteinID:
XP_029308325
UniProt:
A0A6J2RG50
LinkDB
All DBs
Position
16:complement(389484..443472)
Genome browser
AA seq
2766 aa
AA seq
DB search
MAARRQLLLSLIMAACFHGNAAEKTVCTQEAVADIVFMVDGSWSIGSENFKQIRQFLYTL
VNSFDVDPEHVRIGLVQYSTTPRTEFLLNTYQNKKDILKYINNLPYMGGGTQTGQGLDFM
LKKHFVETAGSRGGQKVPQIAVVITDGKSQDNVESHAKDLKRKGIVLYAIGIKDADEDQL
KEIANDPHSQHVYSVSDFAALQGISQSIVQTLCTTVEEVKRQLLQLSQECAKATIADIVF
LVDGSSSIGISNFQEVRQFLRSVVTGLAIGPDKVRIGLAQYSDESYLEFLLKDHMDKTSL
LAAVDTFPYRTGGTETGEAIDFLRTTFFTEDAGSRASQRVPQIAVVITDGDSTDDVLGPA
QRLRQHGVIVFGIGVGAANMKELESIANQPRDRFLSSIDNYQALQRLTDSLLQTVCISVE
DQKQALAERFADIFFLVDSGVTKLEFQQIKSILTRLANQLNIGASAYHLDWAQYGQEVQM
EHLLNSHQTKEETQNNVKLFRQRKLQPNEPRRLGFALQYGSTHFFTSEAGSRAEQGYRQI
LVVISGKDSDDSVYRESRLIKSSGITVVGLSLGASMQEMRVIATAPFIYQSISNVVPALR
AVFETEETETTLTGDCKAAKLADIVFIVDESGSIGNRNFKLVRSFLHSIVSGLEVSPSRV
RVGIVMYNSRATALVHLNTFNNKDELLNFIKILPYHGGGTNTGEALKFTLEKVFIKATGS
RKDTGVQQLAVVITDGESQDNVSTAAAELRRAGVIVYAVGVKGANDAQLVEMVSHPPNKH
KFIVDSFAKLKSLEQSLQKSLCDNILRQDISVSTRRTRIKEGCVQTDEADIFFLIDHSGS
IYPNDFIDMKKFIIEFLHTFRIGPQHVRMGVVKYADLPNLEFDLTTYSDTKTLEKAIDNI
IQIGGGTETGRALKFMGPYFDQAEATRGHKVQEYLIVITDGKSADEVKVPAEKLRAQGVT
VYAIGVKSADTEELKEISGDPKRTFFVNNFDALRPIKDDIITDICSPDACKDVPGDLLFL
IDSSGSIAPQDYSKMKDFMKSVISKSGIGKNEVHAAVMQFSTIQQLAFSLNQYYSKEEML
NAINGMEQVGGGTLTGEAIKGVSQYFDAFKGGRPGIRQSLVVITDGEAQDQVKGPAEALR
DKGVIVYAIGVVDANTTQLLEISGTSERVYSERDFDALKDLENQVAMELCVPESVCRKTE
KADIIFLVDGSTSITLSKFRSMQKFMASMVNQTTVGKNLTRFGVILYSSDPNSIFTLKQY
ASKREVLQAISALKSPYGDTYTGKALAYSLQFFNNDNGGRADLQVPQILMVITDGDATDR
NSLVAPSVALREKGISVFSIGVEGANKTQLEIMAGHDTSKVFYVDNFEALETLYKNITIV
LCNTTKPVCEKQQADLVFLLDQSGSISPQDYATMKKFTSELVNSFKVSEDLVRVGLAQFS
SLFQNEFYLNQFYSSQTVTEHILDMKQLGGGTSIGLALDSIKDYFEASRGSRRSAGISQN
LVLITDGESQDDVEEAANRLRDLGIEVFAIGIGKVHDLELKQITGTPERLFTVQNFGSLE
KIKQKVVDTICKSKPIKDPSDCSIDIAMGFDISRRTGAPGEMLVSGHNKLQSFLPDIAHY
VSSLQGLCCVGPAPVKTNIAFRVVGRDGRSLYDFNFEGYSEEVVKKVMTLNLAEPTYFNT
ALLKSFGQKFSGESRAGVKVLVIFSDGLDEDVMKLEHESELLRKSGVSALLTVALEGARD
PAQLQMVEFGRGFGYKLPLSIGMGSVGSTILKQIDSVSDRECCNVMCKCSGHEGIRGTRG
LPGSKGVSGQKGFPGFPGEEGVAGERGRPGPSGPQGVQGCPGLRGQKGFRGLRGNRGGEG
EDGLDGVNGEQGVTGKDGGRGELGHSGNPGIPGIRGEVGLKGQRGLRGDPGEPGADNTRP
GAKGDPGNPGVPGTAGQDGRPGESGVVGNPGPDGRRGTLGKKGTPGQPGAPGLQGIAGAS
GQQGPGGVRGQPGPRGVPGLPGPQGGPGVAGNLGSAGRRGANGQKGQPGDPGAKGVPGSL
GPRGLPGQDGKDGYGPTGLKGAKGDLGFPGYPGLVGESGLMGPQGYLGRKGNRGRGGNSG
RPGESGVPGEPGYPGHTGLRGPPGGKAKTECQLITYIRDNCACAIDRSECPAYPTELVLG
LDMSEDVTPPAFEKQRSALISLLEDINISESNCPTGARVAVVGYSAYTKYLIRFQDYHRK
TQLMELVKNIALEKTSNRRQLGAAMRFVGQNVFKRVRGGLMMRKVAIFLSNGPSQDVNDI
VTAMMEYRGLNIVPAVVSLEIAPAVAQAMEIDDTRTSIFTVLGRDTAADLQKVKNCAICY
DPCKRLEQCAFIQDPVPPQEVNVDLVMVADSSREMQADEYAGVQQLLVSVVEQLAVSSQP
RRAGSQARVAVVQQSGTQAAKVEFGLGTYQTSALMRRHLLRNMTQQGGSSALGHTLEFCL
KELLLKAGQPRKSRVLLAVVGTQTAHEDRATLHYISQKAKCEGVALFVVTVGERYDRTQV
EELASLPVLQHLIHLDRLKAEEQSYAQRFFRVFLSALSSRTNTYPPPSLKRTCAELPGQS
GGQIFINGQGTAVLDEDEFRDESFQEQTGGTTQTGQLDVIDTLRGDGQRFVSLYNAQCQL
HADTGIPCGDYVQVWFFDKHIGACAPFWYGGCGGNVNRFKSEKECFXTCGVHHPNILPKP
ELASFVSKDSCFLSQDQGGCQNYTMVWFYDTTQNECSRFWYGGCGGNENRFMTQNECEKL
CLTRSR
NT seq
8301 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcggcggcagcttctcctcagcctcatcatggcagcgtgtttccacggcaac
gctgctgagaagacagtctgcactcaagaggctgtggccgacattgtcttcatggtcgac
gggtcatggagcatcggctccgagaacttcaagcagatccgtcagtttctgtacacgctg
gtgaacagcttcgacgttgatcctgagcacgtccgcatcgggctggtccagtacagcacc
actccgcgcaccgagttcctgctcaacacctatcagaacaagaaggacatccttaagtac
atcaacaacttgccttacatggggggcggcacccagacgggtcaaggcctggacttcatg
ctgaagaagcactttgtggagacagctggaagccggggtggccagaaagtgccgcagatc
gctgtggtgatcaccgatggcaaatcacaagacaacgtggagtcccatgctaaggatctg
aagagaaagggaattgttttgtatgcgattggtatcaaagatgcagatgaagaccagctg
aaagagatagccaatgatccgcacagtcagcacgtctacagcgtgtctgattttgcagcg
ctgcagggaatttctcagagcatcgtccagacactttgcacaactgtagaagaagtcaaa
cggcaactcctgcaattgtctcaagaatgtgccaaagccaccatagccgacatcgtcttc
ctggtagacggctcttctagcatcggcatcagtaactttcaggaggtgaggcagtttctc
cgaagcgtcgtcacaggccttgcaatcggccccgacaaagttcggatcggcttggctcag
tacagtgatgaatcttacctggagttcctactgaaggatcacatggacaagacatccttg
ctggctgcagtggacacatttccctacagaacaggaggcacagaaacaggcgaggccatc
gacttccttcggacgacctttttcacagaggacgcagggagccgagccagccaacgggtg
ccgcagatcgctgtggtcatcaccgatggagactccacggacgatgtgttagggcccgcc
cagcgcttgaggcagcatggagtcatagtgtttggcatcggggtgggagcagccaacatg
aaggagctcgagtccattgccaaccagcctcgagaccgcttcctgtcatccatcgataac
taccaggctctgcagaggctgacggacagtctgctgcaaactgtttgcatctctgtggag
gatcagaagcaagccttggcagaaaggtttgcagacatcttcttcctggtggacagcggc
gtgactaaactagagttccagcagatcaagagcatcctcacccgactggccaatcaactg
aacatcggagcgtctgcctaccatctagactgggcccagtatggtcaagaagttcagatg
gaacaccttcttaattctcaccaaaccaaagaggagacccagaacaatgttaagcttttc
cgccagcgaaaactgcaacccaacgagcctcgtagactgggcttcgcgttgcagtacggc
agcactcactttttcacgagtgaagcaggaagccgtgcggaacaaggctaccgacagatc
ctggttgttataagtggaaaagactcagatgattccgtgtatagggagtcacgtctgatc
aaatcatcaggaataactgtggtggggttgagtctcggtgcatcgatgcaggaaatgcgt
gtcattgccactgcaccgttcatataccagtccatcagcaatgtagtacctgcactgagg
gctgtttttgaaactgaggaaacggagaccactcttaccggagattgcaaggcagccaaa
ctggcagacatcgtgttcatcgttgatgagtcaggaagcatcggcaatcgcaatttcaag
ctggtgcgctctttcctgcactcgatagtgagcggcctggaagtcagtccatctagagtc
cgggtgggcatcgtgatgtataactccagggccacagcactggtccacctcaacaccttc
aacaacaaggacgaattgctgaatttcatcaaaatcctgccttatcatggaggtggtacg
aatactggagaggccctaaagttcaccctggagaaggtttttatcaaggcgacaggaagc
aggaaagacactggtgtccagcagttggcagtggtgatcacagatggtgaatcccaggac
aacgtgagcacagcagcagctgaacttcgtcgggcaggggtcattgtttacgctgtagga
gtcaagggtgccaacgatgcccagctggtagagatggtgtctcatccccccaataagcac
aagttcattgtggacagttttgccaagctgaaatctctggagcagagcctgcagaaaagt
ctgtgcgataacatccttcgccaagatatctcagtcagtacaagaaggacgcgcatcaaa
gaaggctgcgtacaaacggatgaagcagacatcttcttcctgatcgatcactcaggaagc
atttaccccaacgacttcatagacatgaagaagttcatcattgagtttcttcataccttt
cgtattgggccacaacatgtccgcatgggggttgtgaaatacgcagatttgccaaattta
gaatttgatctgacaacctactccgataccaagacattggagaaagccatcgacaatatt
atacaaataggaggtgggaccgagacaggaagagcgctgaaattcatgggcccatacttt
gatcaagcagaggccactcgtggtcataaagtccaagagtacctgatcgtcatcacagat
ggaaaatccgctgatgaggtcaaggttcctgcagaaaaactgagggcgcagggtgtcacc
gtgtatgccatcggggtgaagagtgcagacacagaagagctgaaagagatttccggcgac
cccaagaggactttctttgtcaataattttgatgctctgaggcccatcaaggacgacatc
atcacagacatctgttctccagacgcttgcaaagacgtaccaggcgacctccttttcttg
attgacagctctgggagcatcgctccacaagactacagtaaaatgaaagacttcatgaaa
tctgtcatcagcaagtccggcattgggaaaaatgaggtgcacgccgctgtcatgcagttc
agcaccatccaacaactagcgttctccctcaaccaatactacagcaaggaagaaatgttg
aatgccatcaatggtatggagcaggttggtggaggcacactcacaggtgaagccatcaaa
ggtgtgtcgcagtactttgatgcattcaaaggcgggcgtcctggcattagacagagtctg
gtagtgataacagacggcgaggcacaagaccaggtcaaaggccccgctgaggctctgagg
gacaagggagtgattgtctacgccattggagtggtagacgctaacaccacccagctgctg
gagatcagcggtacatcggagagggtgtattctgagagggactttgacgctctgaaagac
ttggagaaccaggtggccatggagctctgtgtcccagagagcgtttgtaggaagacagaa
aaagctgacattattttcctggtggacggctccactagcataaccctgagcaagttcaga
agcatgcagaagtttatggcgtcaatggtgaaccaaaccaccgttggcaagaacctgact
cgctttggagtcatcctctactcctccgaccccaactctatttttactctgaaacagtac
gcctccaaacgagaggttcttcaagctatatcagcactgaagtccccatatggagacacc
tacactggcaaggctttggcgtactctttgcagttctttaacaatgacaacggcggtcgg
gcggatctccaggtgccacagatcctcatggtgatcacagatggcgatgctaccgaccgt
aacagtctggtggcgccatccgtggcactgcgagaaaaaggaatcagcgtcttcagtatc
ggagtggaaggagccaacaagacgcagttggagatcatggctggtcacgacacctccaaa
gttttctatgtggataattttgaggccttggaaactctgtacaagaatattactatagtc
ctctgcaataccaccaagccagtttgtgagaaacagcaggctgacctggtcttcctcctc
gatcagtctggcagcatctccccacaggactacgccaccatgaagaagttcacctcagaa
ctagtgaacagcttcaaagtcagtgaagatttagtgcgggtaggacttgcccagttcagc
agtttgttccaaaatgagttttacctgaaccagttctacagctcgcaaaccgtgaccgag
cacatcttggatatgaagcaactcggtggaggcaccagcatcggactggccctggactcc
atcaaggattactttgaggcatcacggggcagccgaagatccgccgggatctcccagaat
ctggtgctaatcacagacggtgaatcgcaggatgacgtggaggaggcggcgaatcgtctc
agggatctgggcatcgaggtgtttgccatcggcattggaaaagtccacgacctggagctc
aagcagatcaccggcacccctgagaggctgtttaccgtgcagaacttcggcagcttggaa
aagatcaagcaaaaggtggttgacacaatctgcaaatctaaacccatcaaggacccaagt
gactgcagcattgatatcgccatgggattcgatatttctcgaagaaccggagctccgggt
gagatgctggtcagcggccacaacaagctccagagcttcctgccggacatcgcacattac
gtgtcttcgctacaaggcctgtgctgcgtcggccccgcgccggtcaagaccaacatcgcc
ttccgggtggtgggtcgcgatggaagatctctgtacgacttcaactttgagggctacagc
gaggaagtggtgaagaaagtcatgaccttgaatttggcagagcccacttacttcaacacc
gccctgctgaaatccttcggccagaagttcagcggcgagtccagagccggcgtgaaggtg
ctggtgatcttctccgacggactcgatgaagacgtgatgaagctggagcacgagtcagag
ctgctgcgaaagtctggggtcagcgctctgctgaccgtggctctggagggggcccgggac
ccagcccagctgcagatggtggagttcggtcgcggattcggatacaagcttcctctcagc
atcggcatggggagcgtcggcagcaccatcctcaaacagattgactcggtgtcagacagg
gagtgctgcaacgtcatgtgcaaatgttcgggacatgaaggcatccgggggactcggggc
ctcccggggtcaaagggcgtgtctggacagaagggattccccgggttcccaggagaggag
ggcgtcgctggggagcgaggtcgtcctggacccagcggacctcagggggttcagggttgt
ccagggctgcgaggacagaagggcttccgaggcctccgggggaacaggggcggagaagga
gaagacgggctggacggcgttaacggagaacagggtgtgacggggaaagatggcggccga
ggagagctaggacactcaggaaaccccggtatcccgggtatcagaggggaggtggggctg
aaaggacagcgaggactgagaggagatccgggggaaccaggcgctgataacacccgccca
ggagccaagggagaccctgggaacccaggtgtaccggggaccgctggacaggacggccgg
ccgggggagagcggcgtcgtgggaaacccgggtccggatggcagaagagggacgctgggc
aagaagggtactcctggacagcctggagctccaggactccaaggcatcgcaggtgcttca
ggtcaacagggtcccggaggggtcagaggtcaacctggaccgagaggagtccccggcctc
cctggacctcagggtggaccgggagtagctggaaacctgggatcagctggacggcgtgga
gccaacggacagaagggtcaaccaggagatccaggagccaaaggtgttcccggatcactg
ggacctcgaggactaccgggtcaggatggtaaagatggttacggacctacaggactgaaa
ggtgcaaagggagatctcgggtttcctggttatcccggtctggtgggggagagcggcctg
atggggcctcaaggatacctggggcgtaaagggaaccgaggtcgaggcgggaactcaggc
cggccgggagagtcgggcgtgcctggagagccaggatacccaggacacaccggtctcaga
ggtcctccgggaggcaaagcgaagactgagtgtcagctgatcacctacatcagagacaac
tgtgcttgtgctatcgaccggtccgagtgcccggcgtaccccacggagctggtgttgggc
ctggacatgtcggaggacgtgacgccgccggccttcgagaagcagcgatccgccctcatc
tctctactggaggacatcaacatctctgagagcaactgtccgacgggcgctcgcgtcgcc
gtggtcggttacagcgcctacaccaagtacctgatccgcttccaggactaccaccgcaag
actcagctgatggagctggtgaagaacatcgccctggagaagacgtccaaccggcgccag
ctgggggccgctatgcgcttcgtgggtcagaacgtcttcaagcgcgtccgaggcggactg
atgatgaggaaggtggccatcttcctctccaacgggccgtcgcaggatgtcaacgacatc
gtcaccgccatgatggagtaccgcggcctcaacatcgtcccggcggtcgtctctctggag
atcgctcctgctgtggctcaagcgatggagatcgacgacacgcgaacctccatcttcacg
gtgctggggagggacacggctgctgacctgcagaaggtcaagaactgtgcgatctgctac
gacccctgcaagcgtctggagcagtgcgccttcatccaggacccggtgccgcctcaggag
gtgaatgtggacctggtgatggtggcggacagctccagggagatgcaggctgatgagtac
gccggcgtacagcagctgctggtctctgtggtggagcagctggccgtgagctcgcagccc
cgccgggccggcagccaggcccgggtggccgtagtccagcagagcggcacccaggccgcc
aaggtggagttcggcctcgggacctatcagacctccgccctgatgaggaggcacctgctg
cgcaacatgacgcagcagggcggctcctcggcgctgggacacacgctggagttctgcctg
aaggagctgctcctgaaagccggacagccccgcaagagtagggtgctgctggccgtagtg
ggcacccagacggcccatgaggaccgagccacgctgcactacatctcccagaaggccaag
tgcgagggggtggcgctgttcgtggtgacggtcggcgagcgttacgaccggacgcaggtg
gaggagctggccagtctgcccgtcctgcagcacctgattcacctggaccgcctgaaggcc
gaggagcagagctacgcccagcgcttcttcagagtcttcctctccgccctcagcagtaga
acgaacacgtatcctcctccgtctttaaagcggacgtgtgccgagctgccagggcaaagt
ggaggacagatattcataaacgggcaggggacagcagtgttggacgaggacgagtttaga
gacgagagctttcaggagcagacgggaggaacgactcagaccggccagctggacgtcatc
gacacgctgagaggagacggacagagatttgtctcactgtataatgcccagtgtcagctg
catgctgatactggtatcccgtgcggtgactatgtccaagtctggttctttgacaaacac
atcggtgcatgcgctcccttctggtatggcggttgcggcggtaacgtcaaccgctttaag
tcggaaaaagaatgtttctagacatgtggcgtccatcatcccaacatcctgccaaagcca
gagctggccagcttcgtctccaaagacagctgcttcctcagccaggaccagggcggctgc
cagaactacaccatggtgtggttctatgacaccacacagaacgaatgttctcgcttctgg
tacggcggctgcggcggtaacgaaaaccgcttcatgacgcaaaacgagtgcgagaaattg
tgtctgacgaggagccggtga
DBGET
integrated database retrieval system
