Cottoperca gobio: 115022305
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Entry
115022305 CDS
T07513
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03030
DNA replication
cgob03410
Base excision repair
cgob03420
Nucleotide excision repair
cgob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115022305 (lig1)
03410 Base excision repair
115022305 (lig1)
03420 Nucleotide excision repair
115022305 (lig1)
03430 Mismatch repair
115022305 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgob03032
]
115022305 (lig1)
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115022305 (lig1)
Enzymes [BR:
cgob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115022305 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
115022305 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
115022305 (lig1)
DNA replication proteins [BR:
cgob03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
115022305 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
115022305 (lig1)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
115022305 (lig1)
NER (nucleotide excision repair)
Other NER factors
115022305 (lig1)
MMR (mismatch excision repair)
Other MMR factors
115022305 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
115022305
NCBI-ProteinID:
XP_029309133
UniProt:
A0A6J2RE40
LinkDB
All DBs
Position
17:3967206..4000199
Genome browser
AA seq
906 aa
AA seq
DB search
MLRSKRSSVKIAKTLKARKMFPKRKLDESRSGSESQKDEAEAKEEQGQRNKRPRVEGSTT
SAEDTDEPMEEGAKEERVDKVVTEANGSDVEEKKEEEEEEEEEERAKRKSSDEKEKKAEG
AEKKNEAKEKMDDEKGPAVAKNKKKNNNNKKKKKKEEEVVEKDTREGDESPESQTVRKQK
EAKEQKDKEPPKKSPISSFFAPRKATVKMERKTSPERKTSPERKTSPERKTSPERKTSAE
ESKDAKGESTSAQTGYNPSRPNYHPVDHACWERGQKVPYLAVARTFEKIEEDSGRLRNIE
TLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIK
ADAQEKGDLGLVAESSRSNQRTMFQPASLTAGGVFRKLKEIGSMSGNSAMNKKIDIIKGL
FVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAE
SRRAWIEAKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGIPLRPMLAHPTKG
VGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVKK
DSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESL
VRQPLCRRRALLRENFSEVEGEFVFARYIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKD
ATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGTYGGFLLACYDEENEEF
QSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPEVWLDAVQVWEVKCADLS
LSPVYKAAMGMVDPVKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKA
DLEDYY
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgctccaagagaagctcagtgaagatagcaaagacgctaaaggcgaggaagatg
ttccccaagaggaagcttgacgagagcaggagcggcagtgagagtcagaaagacgaggcc
gaggccaaggaggagcagggtcagcgaaacaaacgaccccgtgtggagggcagcaccacc
agcgcagaggacaccgatgaacccatggaggagggagcaaaggaagaaagggttgacaag
gttgtgaccgaggctaacggctctgatgtggaggagaagaaggaggaagaggaggaggag
gaggaggaggagcgggccaagagaaagagctctgatgagaaagaaaagaaagctgagggg
gcggaaaagaaaaatgaagcaaaggagaagatggatgatgagaaagggcctgccgttgcc
aagaacaagaagaagaacaacaacaacaagaagaagaagaagaaggaggaggaggtggtt
gaaaaggacacacgagagggagacgagagcccagagagtcaaacagtgaggaagcagaaa
gaagcaaaagagcagaaagataaggagccacccaagaaatcccccatcagcagtttcttt
gctccaaggaaggctacagtgaagatggagaggaagacgagtccggagaggaagacgagt
ccggagaggaagacgagtccggagaggaagacgagtccagagaggaagacttcagcggag
gagagcaaagacgctaaaggtgagtcgacctcggcacaaacgggctacaatccgtccagg
cccaactaccatcccgtggaccacgcctgttgggagcgaggccaaaaggtgccgtacttg
gcggtggctcgcacctttgagaagattgaagaggactctggcaggctgagaaacatcgag
acgctgtcgaacctgcttcgctccgtgctgctgctctctccagacgacctgttgtgctgt
gtgtacctgtgtttgaaccagctgggtcctgcctacctggggatggagctcggtgttgga
gagactgtgcttatgaaagccgttgctcaagcaactgggcgacaattggacaaaatcaag
gcggacgctcaggagaaaggggatctgggccttgtggccgagagttcccgtagcaaccag
cgcacgatgttccagccggccagtctgacagcagggggcgtgttcaggaaattgaaggaa
atcggcagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctc
tttgtggcatgccgcttttcggaggcccgctacatagtcaggtctctggctgggaagctg
aggattggcctggctgagcagagtgtcctatcggcactaagccaggctgtgtgcctgacc
ccccctggacaaggcttccctcccgctgtgatagacgcaggcaaggggatgagcgccgag
agcaggcgggcgtggatcgaagcgaagagtctgattctcaaacagacttactgcgagatg
cccaattacgacgtcctcatccccgttctgctcaaagaaggtatcgacgagctgcccaat
cactgcaagctcacgccgggtataccgctgagacccatgttggctcaccccaccaagggt
gtcggcgaggtgatgaagaggtttgacgaggcggcgttcacctgcgagtacaaatacgac
ggagagcgtgcacagattcacattctggagagcggggaggttcgagtattcagccgcaac
caggaagacaacaccagcaaataccccgatatcatctctcgcattcccaaggtgaagaag
gactctgttgtttcctgcgtcctggactctgaggcggtggcctgggaccgagagaagaaa
cagatccagcccttccaggtcctcaccacccgtaaaagaaaggacgtggatgcttcggag
atcaaagtccaagtgtgcgtgtacgcctttgacctcctctatctcaacggcgagtccctg
gtgcgacagccgctgtgtcggcgtcgggctctgctgagagaaaacttctcggaggtggag
ggagagtttgtgttcgcccgatacatcgactccgacaacaccgacgccatcgcagagttc
ctggagcagtctgtccgagactcctgtgagggtctaatggtgaagactctggagaaggat
gccacctatgaaattgcaaagcgctctcacaactggctcaagctgaagaaggactacctg
gacggggtgggtgacacagttgatctgtgtgtgattggcgcctacctgggaaaaggaaag
agagcgggcacctacgggggcttcctgctggcctgctacgacgaagagaacgaggagttt
cagtccgtctgcaagatcgggacaggcttcaaggatgaggatctggagcagcattacaag
ttcttaaaggaacacattctgccgaagccccgtgcctactaccgcatcgaccaatcggcg
gagcccgaagtgtggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctgtcg
ctgtcgcccgtctacaaggctgccatgggaatggtggatccagtaaagggcatttctctg
aggttcccgcgcttccttcggatcagagacgacaagaagcccgaggacgccacgactgga
gcgcagatcgccgatttgtacaagaagcagcagcagattcagaatcagggggagaaggcc
gacctggaggactactactga
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