Nakaseomyces glabratus: CAGL0I03828g
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Entry
CAGL0I03828g CDS
T01024
Name
(RefSeq) uncharacterized protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgr
Nakaseomyces glabratus
Pathway
cgr03020
RNA polymerase
cgr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAGL0I03828g
09124 Replication and repair
03420 Nucleotide excision repair
CAGL0I03828g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgr03021
]
CAGL0I03828g
03400 DNA repair and recombination proteins [BR:
cgr03400
]
CAGL0I03828g
Enzymes [BR:
cgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAGL0I03828g
Transcription machinery [BR:
cgr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CAGL0I03828g
DNA repair and recombination proteins [BR:
cgr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CAGL0I03828g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
2889258
NCBI-ProteinID:
XP_447415
UniProt:
Q6FQS9
LinkDB
All DBs
Position
I:complement(328922..334069)
Genome browser
AA seq
1715 aa
AA seq
DB search
MVGQQYSSAPLRTVKEVQFGLFSPEEIRAISVAKIRLPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNE
QMRQAIQIKDPKKRFNAVWSLCKTKMVCETDVPSEDDPTKLISRGGCGNTQPTIRKDGLK
LVGSWKKDKSTGDADEPEQRVLSTEEILNIFKHISPEDSYRLGFNEEFARPEWMILTVLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAVEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKR
SGDVQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
LEFDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPKGIHLQRFDEGTTLLSP
KDNGMLVIDGEIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKVVNFWLLHN
GFSTGIGDTVADGQTMREISETIAEAKQKVEAVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAGHIEKQSLDTMGGSDQAFERRYRID
LLNTSNSLEPSLLESGSEIIGDLKVQMALDEEYKQLVKDRRFLRTIFSDGESSWPLPVNI
RRIIQNAQQTFRIDHTKPSDLTIPEIINSVRDLQDRLLVLRSKSEIIKKAQDDAVTLFCC
LLRSRLATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPEYSADQEKAKLVRSAIEH
TTLKSVTVASEIYYDPDPRSTVIPEDDEIIQLHFSLLDDETEKLLDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKDTFKNDLFVIWSEDNAEKLIIRCRVVRPKALDAETEAEEDHML
KKIENTMLENITLRGIEGIERVVMMKYDRKVPNETGEYQKVPEWVLETDGVNLSEVMTVP
GVDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSSTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITELEDGQDGGATPYSNEAGLVNTDIDVKDELMFSPLVDAGS
SDAMSGGFTAYGGAEYGGATSPFGAYGDAPASPGFGGVSSPGFSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPGSPTYSPKDEDEKKDN
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggtaggtcaacaatattctagtgccccattaaggacagtcaaggaggttcagtttggt
ctgttctcacctgaagagatcagagctatcagtgttgcaaaaattagattacctgagaca
atggatgaaacacaaacaagagctaaaattggtggtcttaacgatccaagattaggttct
attgacagaaacttgaaatgtcaaacctgtcaagaaggtatgaacgaatgtcccggccat
ttcggtcacatagatctagccaagccagtatttcatattggtttcattactaaaatcaag
aaagtttgtgaaagtttgtgtatgcattgtggtaaattattactagatgaacataatgaa
caaatgagacaagcaattcaaatcaaggatccaaagaaaagattcaatgctgtttggagt
ctttgtaaaacaaaaatggtctgtgagactgatgttccttcagaagacgacccaaccaaa
ttaatttccagaggtggttgtggtaacactcaacccactattcgtaaggatggtttgaaa
cttgtgggtagctggaagaaggacaagagtactggtgatgccgatgaacccgaacaaaga
gttttaagtacagaggaaatcctcaacatctttaagcatatatctcctgaggattcttac
agactaggtttcaatgaagaatttgctcgtcctgagtggatgattttaactgttttacca
gtcccaccaccacctgttcgtccttcaatttccttcaacgaatcccaaagaggtgaggat
gatttaacattcaaattggcagatatcttgaaggcaaatataagtttggaaacactagaa
cataacggtgctcctcatcacgctgtggaagaagcagaaagcttgttgcaattccatgtt
gctacttatatggataatgatattgcaggtcaaccccaagctctacagaaatctggtcgt
cctgtgaaatcaattagagcccgtttaaagggtaaagaaggtcgtatcagaggtaacctg
atgggtaagcgtgttgacttttcagctagaactgttatctctggtgaccccaacctagaa
ttagatcaagttggtgttccaaaatccattgctagaactttaacatacccagaagtagta
acaccctacaatattgatcgcctgagtcaactggtacgtaatggtcctaacgaacatcca
ggtgccaagtatgtgatccgtgataatggtgatcgtattgacttgagatacagtaagaga
tctggtgatgtacaacttcagtatggttggaaggttgaacgtcatataatggatgatgat
cctgtgttattcaaccgtcaaccatctttgcataaaatgtcaatgatggcacacagagtg
aaagttgttccttattccacatttagattaaacctttccgttacatctccatataacgcc
gattttgatggtgacgaaatgaatttgcatgtaccgcaatcagaagaaaccagagcagaa
ctatctcaattgtgtgctgttcctttacaaattgtctctccacaatcgaataagccttgt
atgggtattgtgcaagatactctgtgtggtatcagaaaactaaccttgagagatactttc
ttggagtttgaccaagtgttaaatatgttatactgggttccagattgggatggtgtgatt
ccaacgcctgctattataaaacctaagccactatggtctggtaaacaaattctttcagtt
gcaattccaaagggtattcatttacagagattcgatgaaggcacaactcttctttctcca
aaagataacggtatgctagtcattgatggtgagattatctttggtgtcgtagacaaaaag
accgtgggttcttccagtggtggtttgatccacgttgttactagagaaaaaggtccaacg
atttgcgccagactatttggtaatattcaaaaggttgtcaacttttggctattgcacaac
ggtttctcaactggtattggtgatactgttgcagatggtcaaactatgagagaaattagt
gaaacaattgcagaagcaaagcagaaagtcgaagctgttaccaaggaagcccaagcgaac
ttattaacagccaagcatggtatgactcttcgtgaatcttttgaagataatgttgttcgt
ttcttaaacgaagctagagatagagccggtcgtttggcagaaatgaacttgaaggatttg
aataatgtcaaacaaatggttagtgcaggttctaagggttctttcattaatatcgctcaa
atgtcagcgtgtgtaggtcaacagtctgtcgaaggtaaacgtattggcttcggttttgtt
gatcgtactcttcctcacttttctaaagatgattactctcctgaatcaaagggttttgtt
gagaactcatatttaagaggtctaactccacaagagtttttcttccacgctatgggtggt
cgtgaaggtttaattgatacagctgttaaaactgcagaaacaggttatattcaacgtcgt
ttagtgaaagccttagaagatatcatggttcactatgatggtacaactagaaactctctt
ggtaacgttattcaattcatttatggtgaagatggtatggatgcaggtcatatcgaaaaa
caatcattagatactatgggtggatcagatcaagcctttgagagaagatatagaattgat
ttgctaaatacatctaattctttggagccatctcttctagagtctggttctgaaataatt
ggagacttaaaggtgcagatggctttggatgaggaatacaaacaactagtaaaagaccgt
cgtttcttgagaactattttcagtgatggtgaatccagctggcctctacctgtcaatatt
agacgtattatccaaaatgctcaacaaacattcaggattgatcataccaaaccatcagac
ttgacaattccagaaatcattaactcagtaagggatctacaagatagacttttggttttg
agaagtaagagtgagattattaagaaagctcaagatgatgcagtcactctgttctgttgt
ttactacgttcacgtttagcaacacgtagagttttacaagagtacagactaactaaagaa
gcatttgaatgggttcttaacaacgtagaagctcaattcttgagatccattgtccaccca
ggtgaaatggttggtgttctagctgctcaatctattggtgaaccagctactcaaatgaca
ttgaacactttccattttgcaggtgttgcatctaaaaaggttacatcgggtgttcctcgt
ctgaaggaaattttaaatgttgcaaaaaacatgaagacaccatctttaactgtttattta
gaaccagaatactctgctgaccaagaaaaagcaaaactagtgagatcagcaattgagcat
acaacattgaagagtgttacagtagcctcagaaatttattatgatcctgatcctagatca
actgtgataccagaggatgacgaaattattcagctgcatttctcgttattagatgatgaa
acagaaaaattgctagaccaacaatcaccatggttactgagattggaattagatcgtgct
gcgatgaatgataaagatctaactatgggtcaagttggtgagagaattaaagatacattt
aagaatgacttgttcgttatttggtcagaagataatgcagaaaaattgatcattcgttgt
cgtgttgttcgtcctaaggctctcgatgctgaaactgaagctgaagaagatcatatgctg
aagaagatcgagaacactatgcttgaaaatatcaccttgcgtggtattgaaggtattgag
cgtgtcgttatgatgaaatatgatcgtaaagtccctaacgaaactggtgaatatcaaaag
gttcctgagtgggttctcgaaacagatggtgttaacttatctgaggttatgactgtccca
ggtgttgacccaactagaatttacactaactcctttattgatatcatggaagttttgggt
attgaagctggccgtgctgcactatacaaagaagtctacaatgttattgcttctgatggt
tcctacgttaactaccgtcatatggctctactagtcgatgttatgactactcaaggtggc
ttaacatctgttactcgtcatggtttcaatagatcatcaaccggtgcattgatgagatgc
tcctttgaagaaactgttgaaatattgtttgaagctggtgcgtctgcagaattagatgat
tgccgtggtgtgtctgaaaatgttatcttaggtcaaatggcacctattggtacaggtgca
tttgatgttatgattgatgaagaatcattagtcaaatacatgccagaacaaaagattaca
gaattggaagatggccaggatggtggtgctacaccttacagcaatgaggctggtctagtg
aatactgatatcgatgtaaaggacgagctaatgttctcaccattagtcgatgccggttca
tcagacgctatgtcaggtggttttacggcatatggtggagcagaatacggtggagctacc
tctcctttcggcgcctatggtgacgctcctgcatctccagggtttggtggtgtatcatcg
ccaggattctctccaacatcaccagcatactcaccaacctctccatcttactcacctaca
tcaccaagttatagcccaacatccccatcatattcaccaacttctccaagttacagccca
acatcgccatcgtactctccaacctctccatcatattctccaacctctccatcttactct
ccaacttctccaagttacagcccaacatcgccatcgtactctccaacctctccaagctat
agtccaacatcgccatcatactcgccaacatcaccaagttacagtccaacatcgccatca
tactctccaacatcgccaagttacagcccaacatccccatcatattcaccaacttctcca
agttacagcccaacatcgccatcgtactctccaacctctccatcatattctccaacctct
ccatcgtactctccaacttctccatcatactcaccaacatccccaagctatagcccaggc
tcgccaacatattcaccaaaggacgaggacgagaaaaaagataactaa
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integrated database retrieval system