Corynebacterium glyciniphilum: CGLY_08870
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Entry
CGLY_08870 CDS
T03073
Name
(GenBank) Putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgy
Corynebacterium glyciniphilum
Brite
KEGG Orthology (KO) [BR:
cgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CGLY_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgy03400
]
CGLY_08870
Enzymes [BR:
cgy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CGLY_08870
DNA repair and recombination proteins [BR:
cgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CGLY_08870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
AHW64219
UniProt:
X5DSE8
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All DBs
Position
complement(1896994..1898283)
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AA seq
429 aa
AA seq
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MSTAETVEVDGRSVRVTHPNKVMYPSTGTTKRDVIDYLLTVAPWLVGHAHDRPATRKRWV
DGVGTAEHPGQFFFERNLRPGSAPDWVTTRQFEHQTRLTRYPMVNDAATLIWLAQLDALE
IHTPQWRYGPRGGIHGPDRMVFDLDPGEGASLAQCADVAHLVREELDARDLMSVPVTTGS
SGIHVYAEVASGHRPSVVRDIVHRIADDIAGKHPDLVVSRMAREERRGRVLIDWSQNDGV
KTTCVPYSLRGRARPTVAAPRTWDEIDSGVRQLGFRQVADRLLSTGDPLDVLLGPGDGGP
SFVIQEHDASHLHWDFRLEHDGVLVSWALPKGVPRDSGTNRLAVQTEDHPLSYGGFEGRI
DEGSPGAGTVDIWDAGSYSLEKWRDDEIVMTLYGRQNGGLGGEPQKFSLIRTRMNDDSRN
WLLHLMSTK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccgagaccgttgaggtcgacggacgttctgtgcgggtcacacacccgaac
aaggtgatgtacccgtcaaccgggaccaccaaacgcgacgtcatcgactacctgctcaca
gtcgctccatggctggtgggtcatgcgcatgaccgaccagccactcgcaagcggtgggtc
gacggggtggggaccgccgaacacccggggcagttcttctttgagcggaatctgcgtccg
ggtagtgcgccggactgggtgacaacgcggcagttcgagcaccagacccgactgacccgc
tatccgatggtcaatgatgcggccacgctcatctggctcgctcagctggacgcgctcgag
atccacacgccccagtggcgttacgggccgcgtggcggcattcacggccctgaccggatg
gtcttcgaccttgaccctggtgagggggcaagtctggcgcagtgcgcggacgttgcacat
ctcgtccgggaagaactcgatgcgcgcgaccttatgtcagtacccgtgactacgggcagc
agcgggatccatgtctacgcggaggtggcctcaggccaccgcccgtccgtcgtccgggat
atcgtccatcgcatcgctgacgatatcgccgggaaacacccggatctcgtggtgtccagg
atggccagggaagagcgtcggggaagagtcctgattgactggagtcagaacgacggggtg
aaaaccacgtgcgtaccctattcactgcgcggacgggcgcgtccgacggtcgcagcgccc
cgtacctgggatgaaatcgacagtggcgttcggcaactcggcttccggcaggtcgccgac
cggctgctcagcaccggtgatccgttggacgtcctgctgggccccggtgacggcggaccg
tccttcgtcatccaggaacatgatgcatcgcacctgcactgggacttccgcttggagcat
gacggcgtgctggtgtcctgggcactgccgaaaggggtgccccgggactccggaaccaac
cggctggcggtgcagaccgaggatcatccgctcagctacggcggattcgagggcaggatc
gacgaaggaagccccggtgccggcaccgtggatatctgggacgcggggtcctacagcctc
gagaaatggcgggacgacgagatcgtcatgaccttatacgggcgacagaatggaggactc
ggcggggaaccacaaaagttctccctgatccggacacggatgaatgacgacagcagaaac
tggttgctgcatctgatgtccacgaagtga
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