Campylobacter hominis: CHAB381_0469
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Entry
CHAB381_0469 CDS
T00577
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cha
Campylobacter hominis
Pathway
cha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHAB381_0469 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cha03400
]
CHAB381_0469 (mfd)
Enzymes [BR:
cha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHAB381_0469 (mfd)
DNA repair and recombination proteins [BR:
cha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHAB381_0469 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SNF2-rel_dom
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ABS50984
UniProt:
A7I0L6
LinkDB
All DBs
Position
complement(425908..428868)
Genome browser
AA seq
986 aa
AA seq
DB search
MIQSKIYEYFSKNSKEILITENDKEAQISDQVLKFIGFETFVLPDFRALHGEDLRSYYDE
LISISTVLSAFYKCKNKKIIISPIRTILNKLPAKSQLKFLNLKFADKLEISNFKDEILRI
GYLTNDIVQSKGEVSFRGEIIDIFALNYEKPIRILLNDDEIESIRFFDESTQKSEPTEIE
SIEIAPFLANLSKDEFENTNEKIANFDSDALIKDLSSLGFWFIDGFIDYLQNFSFICLNK
LDTNEIFSERNLDFLNQAEILPEPKKFKDLVITPSAEFFEFHKDAQITLIARNSALIDEL
NISISPNIKILREDLVVNLISNDEIIISLNKFKAKKRVRKSSLAVDELQIGDFVVHENYG
VAKFAGLELIEVLGSKSEFVVLEYFGGDKLLLPVQNLNLIDRYIASGVATLDKLGKTGFA
KIKEKVREKLFAIASKIIQTAAARELVRGIVIENNTPEYAKFLSSAGFEYTKDQQNAVNA
IFTDLKSGKVMDRLISGDVGFGKTEVAMNAIFACIKSGYSALFFVPTTLLSAQHYATLKE
RLTPFKIQVFRLDRFTGAKEKAEISKKIKDKIPIVIIGTHALLNMEVANLGLIIIDEEHK
FGVKQKEKLKSKSAASHVLSMSATPIPRSLNMALSSLKSYSVLSTPPLDRLDVRTFVKER
DEKIIKEAIMREIRRGGQVFFVHNHIATIETCRKNLQKIVPNLKILILHSQIDAKTTENE
ILKFEAGEYEILLCTSIVESGIHMPNVNTIIVENANKFGIADLHQLRGRVGRSAKQGFCY
FMVEDKTALNEDAIKRLIALESNSFLGSGSVLAYHDLEIRGGGNLIGEAQSGHIEAIGYS
LYIKMLEDEINKLMNKKTQNKDVELKIAVNAFLNSDFIREDRLRLDLYRRLSKAETVSQV
YEIFGEIEDRFGKADIYTKQFIDLMIIKILANSLNIKSITSAEQNILITYANGEKMRLKS
SSKDDDDVLAEILIYLRKENKKHGLE
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgatacagtcaaaaatttacgaatatttttctaaaaactcaaaagaaattttaattacg
gaaaacgataaagaggctcaaatttcagatcaagtgctgaaatttataggttttgaaaca
tttgtcttacctgatttcagggcattacacggtgaagatttaagaagttattatgacgaa
ttgatttcaataagcaccgtactttcggcattttataaatgtaaaaataaaaaaatcatt
atttcaccgattagaactattttaaataaacttccggcaaaatcacaacttaaattttta
aatctaaaatttgcggacaaacttgaaatttcaaactttaaagatgaaattttaagaatc
gggtatttgacaaacgatatcgttcaaagtaaaggcgaagtcagttttcgcggtgaaatt
attgatattttcgcgctgaattatgaaaaaccgattagaattttattaaatgacgatgaa
atcgaaagtataagattttttgacgaaagcacgcaaaaaagtgaaccgacagaaatagaa
tcaatagaaatagcgccgtttttagcaaatttaagcaaagatgagtttgaaaacacaaat
gaaaaaatcgcaaatttcgattcggacgcgcttataaaagatctttccagtctcggcttt
tggtttattgacggatttattgactatttgcaaaatttcagcttcatctgtttaaacaaa
ctcgacacaaacgaaatttttagcgagcgaaatttggattttttaaatcaggctgaaatt
ttacctgaaccgaaaaagttcaaagatttggttataacaccaagtgcggagttttttgaa
tttcataaagacgcacaaatcacgcttatagcgcgaaattccgctcttatagacgaattg
aacatttcaatttcgccaaatatcaaaattttacgtgaagacttagtcgtaaatcttatc
tcaaatgacgaaataattatatctcttaataaatttaaagcaaaaaaaagagtcagaaaa
agctcacttgctgttgatgagcttcaaataggcgatttcgtagtacatgaaaactacggc
gttgcgaaatttgcaggtcttgaacttatagaagttcttggctcaaaaagtgaatttgtg
gttttggaatatttcggcggcgataaattactgcttcctgtgcaaaatttgaacttaatc
gatcgctacatcgcaagcggcgtggctacgcttgacaaactcggtaaaaccggttttgca
aagatcaaagaaaaagtgcgtgaaaaactttttgcaatcgcttcaaaaatcattcaaaca
gcagcagccagagaacttgtgcgcggtatagtaatagaaaataatacacctgaatacgca
aaatttttaagcagcgcaggatttgaatacacaaaagatcaacaaaatgcagtaaatgcg
atatttacagatctgaaaagcggcaaagttatggatagactgattagcggcgatgtaggt
ttcggaaaaacggaagttgcgatgaatgcaatttttgcatgtatcaaaagcggctattcc
gcgctgtttttcgtgcctacgacacttcttagcgctcaacactacgccacattaaaagaa
agacttactccttttaaaattcaggtttttcgccttgacagatttacaggcgccaaagaa
aaagctgaaatttcaaaaaaaataaaagacaaaattcctatcgtaatcataggaactcac
gcgcttttaaacatggaagtcgcaaatcttgggcttattataattgacgaagagcataaa
ttcggtgtaaaacaaaaagaaaaactcaaatcaaaatccgccgcttcacacgttttaagt
atgagtgctactccaattccgcgctcgctcaatatggctttaagctctttaaaaagctac
agcgttctttcgacgccgccgcttgatagacttgatgtaagaacattcgtaaaagagcgg
gatgaaaaaatcattaaagaagcgattatgcgtgaaattcgccgtggcggacaagtattt
ttcgtgcataatcatatcgctacaattgaaacttgcagaaaaaatttacaaaaaatcgta
ccgaatcttaaaattttgatacttcactcacaaattgacgcaaaaactacagaaaatgaa
attttgaaatttgaagcaggtgaatatgaaattttactatgcacaagtatcgtagaaagc
ggaattcatatgccaaacgtaaatacaattattgtagaaaatgcaaataaattcggcatt
gcagatcttcaccaactgcgcggacgtgttggtagaagcgcaaaacaagggttttgctat
tttatggtagaagataaaacagcacttaatgaagatgccataaagcgtcttatagcgctt
gaaagcaattcgtttttaggttccggttcagtgcttgcttatcacgatcttgaaataaga
ggcggtggaaatttaatcggcgaagcacaaagcgggcatatagaggcaatcggatattca
ctttatattaaaatgcttgaagatgaaataaataaactgatgaataaaaaaacgcaaaat
aaggatgtagagctaaaaattgccgtaaatgctttcttaaacagcgattttatacgagag
gatcgattgagactcgatctttacagaagactcagcaaagccgaaaccgtttcacaggtt
tatgaaattttcggcgaaattgaagatagattcggtaaagccgatatttacacaaaacaa
tttattgatttgatgattattaaaattttggcaaacagtcttaatatcaaatcaattact
tctgcagaacaaaatatattaataacatatgcaaacggcgaaaaaatgcgtttaaaatca
agcagcaaggacgatgatgacgttttagccgaaattttgatatatttacgaaaggaaaat
aaaaaacatggactggagtaa
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