Corynebacterium hadale: CHAD_04975
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Entry
CHAD_04975 CDS
T09187
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chad
Corynebacterium hadale
Pathway
chad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHAD_04975 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chad03019
]
CHAD_04975 (deaD)
03009 Ribosome biogenesis [BR:
chad03009
]
CHAD_04975 (deaD)
Enzymes [BR:
chad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHAD_04975 (deaD)
Messenger RNA biogenesis [BR:
chad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHAD_04975 (deaD)
Ribosome biogenesis [BR:
chad03009
]
Prokaryotic type
rRNA helicases
CHAD_04975 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
WKC59879
LinkDB
All DBs
Position
1063066..1065117
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AA seq
683 aa
AA seq
DB search
MSNSENATGSENGPDMNLSETQTTPQDVAADAVESAAAEDTRDAGPSEHTGASEQKTAEA
TENVNTDATEATAPNESNEDKAEPENGFTTLSLPDNVITAVKKVGFEKPSAIQAETIPLL
MQGRDVVGLAQTGTGKTAAFALPILSRIDTSKRYPQALILAPTRELALQVSDSFQSFADH
LGGVHILPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISSLRFLVLDEADE
MLNMGFQEDVERILEDTPDEKQVALFSATMPKAIRRISRDYLNDPEEVTVKSETRTNTNI
TQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEELAEKLRARGFSAAAINGDIA
QQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAG
RSGEAILFVTPRERRMLRSIERVTNAKIEEMDLPTVDEVNESRKAKFMDSITESLEASDL
QIFKSMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPKDKRDRRDRDRWDRDDRGG
RGRGRGRDDRDDRGRGKRRHNDSDNFDTYRLDVGKRQHVRPGAIVGALANEGGLNSKDFG
RITIGGDFTLVELPKQLDKKVLDRLSDTRISGQLINIQRDHGALPRDRGGRGRRGGFGDH
KDRRDKFRGDRRDRGGRGKRHWD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattccgaaaacgcgaccggcagcgaaaatgggccggatatgaacttgtcggaa
actcagaccaccccgcaggatgtcgcagcggacgcagttgagtctgccgctgcagaagac
accagggatgcgggtccctctgagcacaccggcgcttctgagcagaagactgcagaagcc
accgagaatgtaaatactgatgcaaccgaagcgacggcgccgaacgagtccaacgaggat
aaggcggagccggaaaacggcttcaccacgctgagcctgccggacaacgtgatcacggca
gtgaagaaggtcggctttgaaaaaccgtccgcaatccaggcggagacgattccgctgctg
atgcaaggccgcgacgttgtcggcctggcacagaccggcacgggcaagaccgcggcgttc
gcgctgccgatcctgagccgcattgacacgagcaagcggtacccgcaggcgctcatcctc
gcgccgacgcgcgagttggcgctgcaggtgtccgattccttccagtccttcgccgaccac
ctgggcggcgtgcacatcctgccgatctatggcggtcaggcgtacggcatccagctgtct
ggcctgcgccgcggcgcgcagatcatcgtgggcaccccgggccgcgtcatcgaccacctg
gagaagggatcactggacatttccagcctgcgcttcctggtgctggacgaggccgacgag
atgctcaacatgggcttccaggaggacgtcgagcgcatcctggaggacacgccggacgag
aagcaggtggccctgttctccgcgacaatgccgaaggcgatccgccggatctcccgcgac
tacctcaacgaccccgaagaggtcaccgtcaagtcggagacccgcacgaacaccaacatc
acgcagcgctacctgttcacggcgcaccgcaacaagctcgacgcgattacccgcatcctt
gaggtgaccgagtttgaggcgatgatcgtcttcgtccgcacgaagaacgagaccgaggag
ctggctgagaagctgcgcgcccgcggattctccgccgccgccatcaacggcgacattgcg
cagcagcagcgcgagcgcacggtggatcaactgcgcgacggccgcctggacatcctcgtg
gccaccgacgtcgccgcccgcggcctcgacgtcgagcgcatctcgcacgtgcttaacttt
gacatcccgaacgacaccgagtcgtacgtccaccgcatcggccgcaccggccgcgcgggt
cgctccggcgaggcgatcctctttgtcaccccgcgcgagcgtcgcatgctgcgctccatc
gagcgcgtgaccaacgcgaagatcgaagagatggacctgcccaccgtggacgaggtcaac
gagagccgcaaggcgaagttcatggactccatcaccgagtccctcgaggcttccgacctg
cagatcttcaagtccatggtgcgcgagtattcggcggccaacaacgtgccgatggacgac
atcgccgcagcactcgccacgcaggcgctcgcgggcgacgagttcctcatgaaggagccg
ccgaaggacaagcgcgatcggcgcgatcgcgaccgctgggatcgcgacgaccgtggtggg
cgcggccgagggcgtggccgcgacgaccgtgacgatcggggccgtggcaagcgccgccac
aacgacagcgacaactttgacacctaccgcctggacgtgggcaagcgccagcacgtccgg
ccgggtgccatcgtcggcgcgctggcgaacgagggcggcctcaactccaaagacttcggc
cgcatcaccatcggtggagacttcaccctggtggagctgccgaagcagctggataaaaag
gtcctggaccggctctccgacacccggatttccggtcagctgatcaacatccagcgcgat
cacggcgcactcccgcgcgaccgaggcggtcgcgggcgccgcggtggcttcggcgaccac
aaggatcgccgggacaagttccgcggcgatcgccgcgacagaggcgggcgcggtaagcgt
cactgggactag
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