Clupea harengus (Atlantic herring): 105889985
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Entry
105889985 CDS
T09045
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
char03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105889985 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
105889985 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105889985 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
char03400
]
105889985 (gtf2h2)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105889985 (gtf2h2)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105889985 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
C1_2
HMBD
Motif
Other DBs
NCBI-GeneID:
105889985
NCBI-ProteinID:
XP_012671378
Ensembl:
ENSCHAG00000024126
UniProt:
A0A6P3VGQ9
LinkDB
All DBs
Position
7:5783527..5789521
Genome browser
AA seq
410 aa
AA seq
DB search
MLQILLILKFYRCLDFNKMDEEPEIAKRWEGGYERTWEVLKEDESGSLKATVEDILFQSK
RKRVIESHGQVRLGMMRHLFVVVDTSRTMDDHDLKPNRLTSTLKLLEFFVDEYFDQNPIS
QIGIITTKNKRAEKLTDLSGNSKKHITALKKAVDTTCIGEPSLYNSINLAMQTLKHMPGH
TSREILIVLSSLTTCDPANIYELVKTLQGLKIRVSVIGLSAEVRVCTVLTRDTGGSYNVI
LDECHFRELLMLHVKPPPASTSSECSLIRMGFPQHIIASMSEQDAKPSFSMAHLDSTGGP
GLGFGGYYCPQCRAKYTELPVECKVCGLTLVSAPHLARSFHHLFPLDAFQESPLEELTGE
RFCQGCQGQLKDQSVFTCPVCRTVFCVECDLFIHDTLHCCPSCIHSQGMS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaatcttgttaattctaaaattttataggtgcttggatttcaacaaaatggat
gaagagccggagattgccaagaggtgggaagggggttacgagcggacctgggaggtgctt
aaagaggatgagtctggatctctgaaggccacagtagaagacattcttttccagagcaaa
aggaaaagggtcatcgagagccatgggcaggttcgactggggatgatgcggcacctgttt
gttgtggttgacacctcccgaaccatggatgaccatgacttaaagcctaaccgcctgacc
tctaccctgaagcttctggagttttttgtggacgagtactttgaccagaacccaatcagt
cagataggaattataaccaccaaaaacaagagggcggagaaactgactgacctttctggg
aactccaagaaacatatcactgccctaaagaaagcggtggacactacatgtattggagag
ccttccctctacaactccattaaccttgctatgcagactctgaagcacatgccgggacat
accagtagagagattctgatcgtcctcagcagcctaacaacatgtgaccctgcaaacatt
tatgaactcgtaaagactctgcaaggcctgaaaatccgtgtgtctgtgataggcctgtct
gcagaggtgcgagtgtgcaccgtcctcacacgagacactgggggttcctacaatgtcatc
ctggatgaatgccatttccgtgagttgttgatgttgcatgtgaagcctcccccggccagc
acctcgtctgagtgctccctcatccgcatgggtttcccacaacacatcattgcttccatg
tcagaacaagatgccaagccatccttcagcatggcgcacttggatagcactggtggtcct
ggactgggttttggaggatactactgcccccaatgcagagccaagtacacagaattacct
gtggagtgtaaggtttgtggtctgacgctggtgtctgctcctcacctggcacgatccttc
caccatctcttccccctggatgccttccaggagagtcccctggaagaacttacaggagag
aggttttgccaaggctgtcaaggtcaactgaaagaccaaagtgtgttcacctgccctgtg
tgtcggactgtattctgtgtggaatgtgacctcttcatccacgacaccctgcactgctgt
cccagctgcatccacagccaaggaatgtcttga
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