Clupea harengus (Atlantic herring): 105890522
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Entry
105890522 CDS
T09045
Symbol
trim32
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM32
KO
K10607
tripartite motif-containing protein 32 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105890522 (trim32)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105890522 (trim32)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105890522 (trim32)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105890522 (trim32)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-RING_5
zf-B_box
zf-C3HC4_2
zf-C3HC4_4
Baculo_IE-1
GIY_YIG_2
zf-RING_4
ERM_helical
Motif
Other DBs
NCBI-GeneID:
105890522
NCBI-ProteinID:
XP_012672012
Ensembl:
ENSCHAG00000006233
UniProt:
A0A6P3VI60
LinkDB
All DBs
Position
12:complement(8983333..8988714)
Genome browser
AA seq
671 aa
AA seq
DB search
MATAVPLDPDLLREVLECPICLETYSQDHLRPKLLQCGHTVCRQCLEKLLASTINGVRCP
FCSKVSRMSSITQLADNLTVLKIIDCACSWCPSTTLMCKSCNNRLPRQYCRDCAMVLCDA
CKAETHQQQGHAVQTIRTAAEQHRKELGGRLSALRETMASIQKKKAAIDSVAKSLRLKYK
AVQQEYARAELRLQEELGRSRRAFAASMAEVEKLNAQILEEQTYLLNIAEVQVVSRCEYL
TTRIKQSDIALLEDGCSTSGGDEDEPDLKASLPLLLKLQDPELVKTEHPKPLDVGQLTTK
PCTVNTDEEDGQELVAAAAASAPLDLYRDIDMITAVEAVCASPGSFKSKSVDGGGPSPGA
TGSSSASGAQLCQFVKKMGCKGNLPGMFNLPVSICVTPQGEVLVADRGNYRIQIFNRKGF
QREIRRNPSSIDNFVLSFLGADLPNLIPLSIAITPQGLIGVTDNYDNSVKVYTTDGHCVA
CHKNQLIKPWGIAAMPSGQFVVSDVEGGKLWCLAVDRNVGVVNYNRLCSAVRPKFVTCDP
AGTVYFTQGLGLNIENRHNEHHLEGGFSIGSVGMDGQLGKQLSHFFSETEDFRCITGMCV
DANGDLIVTDSGRKEILQFPKEGGYNVLIAEGLTCPVGVAVTQKGQLLVLDCWDHCVKVY
TYLQKRRSSTC
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcggttccgctggacccggacttgttgcgggaggttctggagtgccccatt
tgcctggagacgtacagccaggatcatctgcggcccaagcttctgcagtgtggccacacc
gtgtgccgtcagtgtctggagaagctgctggccagcaccatcaacggcgtgcgctgtccc
ttctgcagcaaggtctcacgcatgagcagcatcacgcagctggccgacaacctgaccgtg
ctgaagatcatcgactgcgcctgctcctggtgccccagcaccacgctcatgtgcaagtcc
tgcaacaaccgcctgccgcgccagtactgccgcgactgcgccatggtgctgtgtgacgcc
tgcaaggccgagacacaccagcagcagggccacgccgtgcagaccattcgcaccgccgct
gagcagcaccgcaaggagctgggcggcaggctgtcggcgctgcgcgagaccatggccagc
atccagaaaaagaaagcagccatcgacagcgtggccaagtctctgcggctcaagtacaag
gcggtgcagcaggagtacgcccgggcagagctgcggctgcaggaggagctgggccgatcg
cggcgcgcctttgccgcctccatggccgaggtggaaaagctcaacgcccagatcctggag
gagcagacgtacctgctaaacatcgccgaggtgcaggtggtgtcgcgctgcgaatacctc
accacgcgcattaaacagtcggacatcgctctgctggaggacggctgcagcacgtcgggc
ggcgacgaggacgagcctgacctgaaagccagcctgccgctgctgctgaagctgcaggac
cccgagctggtcaagacggagcaccccaaaccgctggatgtggggcagctgaccaccaag
ccctgcactgtcaacacggacgaggaggacggacaggagctggtggccgccgctgccgcc
tccgcaccgctagacctctaccgcgacatcgacatgatcacggccgtggaggcggtgtgc
gcctcgcccggcagcttcaaatcaaagtcggtggatggcggggggccgtctcccggggcg
acagggtcatcatcagcgtcgggcgcacagctctgccagttcgtgaagaagatgggctgc
aagggcaacctacccggcatgttcaacctgccggtgagcatttgcgtgacgccgcagggc
gaggtgcttgtggctgaccgcggcaactaccgcatccagatcttcaaccgcaagggcttc
cagcgggagatccgccgcaaccccagcagcatcgacaacttcgtgctcagcttcctgggg
gccgacctgcctaatctcatcccgctctcgatcgccatcacgccccagggcctcatcggc
gtcaccgacaactatgacaactccgtcaaggtttacaccaccgacggccactgcgtggct
tgccacaagaaccagctcatcaagccgtggggcatcgccgccatgccctcgggccagttt
gtggtgtcggacgtagagggtggaaagctgtggtgcctggcggtggatcggaacgtgggc
gtggtgaactacaaccgtctgtgttcggcggtgcggcccaagttcgtgacgtgcgacccg
gcagggacggtgtacttcacgcaagggctgggcctgaacatcgagaaccggcacaacgag
caccacctggagggcggcttctccatcgggtcggtgggcatggacggccagctgggcaag
cagctgagccacttcttctccgagacggaggacttccgctgcatcacaggcatgtgcgtg
gacgccaacggcgacctgatcgtcacggacagcggccgcaaggaaatcctgcagttcccc
aaggagggcggctacaacgtgctgatcgcggagggactcacctgccccgtgggggtggcc
gtaacgcagaagggccagctgctggtgctggactgctgggatcactgtgtcaaggtctac
acgtacttacagaaacgacgttcctccacctgctag
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