Clupea harengus (Atlantic herring): 105891900
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Entry
105891900 CDS
T09045
Symbol
mef2d
Name
(RefSeq) myocyte-specific enhancer factor 2D isoform X1
KO
K09262
MADS-box transcription enhancer factor 2D
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
105891900 (mef2d)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105891900 (mef2d)
04131 Membrane trafficking [BR:
char04131
]
105891900 (mef2d)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box regulators of differentiation, MEF-2
105891900 (mef2d)
Membrane trafficking [BR:
char04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
105891900 (mef2d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
HJURP_C
RNase_H2_suC
Motif
Other DBs
NCBI-GeneID:
105891900
NCBI-ProteinID:
XP_031432263
Ensembl:
ENSCHAG00000007966
UniProt:
A0A6P8FWH2
LinkDB
All DBs
Position
11:5846327..5906617
Genome browser
AA seq
630 aa
AA seq
DB search
MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
DMDKVLLKYTEYNEPHESRTNADIIEALNKKEQRDSESPDPEEPFSLTPRTEEKYKKIDE
EFDKMMQSYRLSSTVPAPTFSMPVTVPVSNQSQLQFSSNPSSALVTTSFVTSTLTDPRLL
SPQQPALQRNTVSPGLPQRPASAGALLGGDLNNSNGACPSPVANGYISARASPGLLSVSN
GNSMGKVVPAKSPPPPSPQMVNSRKPDLRVITSQSGKSLLQLTDEELELVSENAQRLGAS
QVTQPLTTPVVSVATPSLLTPFSAMPTAYNTVLRLEEWADACQCYEQADCSFSGTHGVCL
AVSPAARLCNEYQLTSADLTALQAFTSPGGLLPGNMTTWQQQQQQPSVSQQQQQQQQQQQ
QPQQQQQQQPQQLSLASLSNLVMWGADKQNGEMANCISSFAANLSVTSQASLLLGRDEGF
SWPMGHLPQGATLTVNTNPNVSIKSEPVSPNRDRSTPSSSSGGQGLAAAAAAAAAAAVAG
TGGGAAGGLSQYPGALRLEVTGRSPVDSLSSNGSSYDGSDRDEGGQPRPPDFGSTMGLLR
TSGEAQGAASAEQPEQGANVKRMRLDTWVT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaaaagattcagattcagaggatcacggacgagcggaaccgacaggtgacg
ttcaccaagcggaaatttggcctgatgaagaaggcgtacgagctgagcgtgctgtgcgac
tgcgagatcgccctcatcatcttcaaccactccaacaagctgttccagtacgccagcacc
gacatggacaaggtgctgctcaagtacacggagtacaacgagccccacgagagccggacc
aacgcagacatcatagaggctctgaacaagaaagagcagcgagactctgagagcccagat
ccagaggagcccttctcactcaccccccgcactgaggagaaatacaaaaaaattgacgag
gagtttgataaaatgatgcagagctataggctgtcatccacagtcccggcgcccaccttc
tccatgcccgtcaccgtgcccgtgtccaaccagagccagctgcagttcagcagcaacccc
agcagcgccctcgtcaccacctccttcgtcacgtccacgctcacagacccgcgcctcctg
tcgccacagcaacccgccctccagaggaacaccgtatcgcccgggttaccacagcggccg
gccagtgcaggtgcgcttctaggcggtgacctcaacaactcgaatggagcgtgtccaagt
ccagtggcaaacgggtacatcagcgccagagcctccccaggactcctctccgtgtccaat
ggcaacagcatggggaaagtagttccggccaagtctccgcctccgcccagccctcagatg
gtgaacagccgcaagccggacctccgggtcatcacttcgcagagtggaaagagcctgctg
cagctgacagacgaagagctggagttggtgagtgagaatgcccagcggttaggcgcctct
caagtgacccagccactcaccacaccggtggtttccgtggcaactccaagcctcctgact
cctttctcagccatgccaacagcctacaacacagtgttgaggttagaagaatgggcagat
gcatgtcagtgttatgagcaggctgactgcagtttctcagggactcatggagtttgcctg
gctgtctctcccgctgctcgtctctgtaatgagtatcagctgacaagcgccgatctcacc
gcactccaggctttcacgtcgccgggcgggctgttgccaggcaacatgaccacttggcaa
cagcaacagcagcagccatcagtatcccagcaacaacagcagcagcagcagcaacaacaa
cagccgcaacagcagcagcaacaacagccacagcagctaagcctggcctcgctcagtaac
ctggtcatgtggggcgcagacaaacagaatggggagatggctaactgcatctccagcttt
gcggctaacctcagtgtgacctcacaggcaagcttactgctgggcagagatgaggggttc
agctggcctatgggtcacttacctcagggcgccacgctgaccgtcaacactaaccccaac
gtgagcatcaagtcggagccagtctctcccaaccgggaccgcagcacgcccagttcctcc
tccggtggtcagggcctggcggcggccgcggcggccgcggcggcagcagccgtggcgggg
acgggtgggggcgcggcggggggcctgagccagtaccccggagccctgcgcctggaggtc
acgggccgctcgcccgtcgacagcctgagcagcaacggcagctcgtacgacggcagcgac
cgcgacgaggggggccagccccggcccccggacttcggctccaccatggggctcctgagg
acctcgggcgaggcgcagggagcagcgtccgccgagcagccggagcagggagccaacgtc
aagcgcatgcgactggacacctgggtcacataa
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