Clupea harengus (Atlantic herring): 105891918
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Entry
105891918 CDS
T09045
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105891918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105891918
03009 Ribosome biogenesis [BR:
char03009
]
105891918
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105891918
Spliceosome [BR:
char03041
]
Complex A
U1 snRNP components
U1 related factors
105891918
Complex B
105891918
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
Pre-60S particles
Helicases
105891918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
UTP25
Motif
Other DBs
NCBI-GeneID:
105891918
NCBI-ProteinID:
XP_012673580
Ensembl:
ENSCHAG00000009213
UniProt:
A0A6P3VJH0
LinkDB
All DBs
Position
1:17499117..17504754
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AA seq
642 aa
AA seq
DB search
MPGYSDRDRGSERRYGSSPPRFGGNRGGGGGGGGRYGSNDRFGGGRGGGQGKKFGNPGEG
LRKKHWNLDELPKFEKNFYKEHPDVTHRPPQELEQFRRTNEVTVKGRDCPNPILQFYEAS
FPTYVMDVINKQNWPSPTPIQSQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQP
FLERGDGPICLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEI
CIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA
TWPKEVRQLAEDFLRDHVQINVGALQLTANHNILQIVDVCNDAEKDNKLLRLLEEIMSEK
ENKTIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRHGKAPILIATDV
ASRGLDVEDVKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPGNMKQAGDLISVL
REANQAINPKLIQMAGDRGGRGRGGRGGHRDDRDRFSSGRRDFGSFRDRDNDRGYDNGPK
KAFGNKTQNGGGYGSNGSFNGSGGNSYGGGGGGYSSNGQANHGVPFVGQTFQNQQFGGAN
QSGALQNGMNQSQFPFNPQQQPPQPMAQPLMPFPPMPPSFPQ
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattctgacagagatcgcggaagtgaaagaagatatggtagcagccccccg
cgttttggaggcaaccgaggaggcggcggtggcggcggcggcagatacggtagcaacgac
cgttttggaggcggccggggaggaggccagggaaagaagtttggcaatcctggcgaaggg
ctgcgtaagaaacactggaacctagacgaattgccgaagtttgagaagaacttctacaaa
gaacaccctgatgttacacacagacccccgcaagaactggaacagttcaggaggaccaat
gaggtgacggtgaagggcagagactgtcccaatcccatcctacagttctatgaagccagt
ttccccacatacgtgatggatgtaatcaacaaacagaactggcccagtccaacacctatc
cagtctcagggttggcctttggcgctgagcgggaaggatatggttggcattgcacagact
ggatcagggaaaaccctctcttatcttctacctgcaattgttcacattaaccatcaacct
ttcctggagcgtggagatggtcctatttgtttggttctggcccctacccgagagcttgca
cagcaagtccagcaggtggcagcggagtacggcagagcttctcgtctcaagtctacctgc
atctatggaggggcccctaaaggacctcagattcgggacctagagagaggggttgaaatc
tgcattgccacaccaggaaggctgattgacttcttggaggttggcaagactaacctgcgt
cgctgcacttacctggtgctggatgaggctgacagaatgctggacatgggtttcgagccc
cagatccgcaagatcgttgatcagatcaggcctgacaggcagaccctcatgtggagtgcc
acctggcccaaagaggtcaggcagctagctgaggacttcctgcgggatcatgtgcaaatc
aacgtgggcgccctgcagctgaccgctaaccacaacattctgcagattgttgacgtctgc
aatgacgcagaaaaggataacaagctgcttcgtcttctggaggagatcatgagtgagaag
gagaacaagaccatcatttttgtagagaccaagaggcggtgtgatgagctaaccaggcgg
atgaggagggatggatggccagcaatgggtattcatggtgacaagagccaacaggagaga
gactgggttctcaatgagtttagacacggcaaagctcccatactgattgccacagacgtc
gcatccaggggtcttgatgtggaagacgtgaagttcgttatcaactatgactaccccaac
aactctgaagattatattcaccgcattgggcgcacggcgcgtagtcagaagactggaacg
gcctacaccttcttcactcctggcaacatgaagcaggcaggagacctcatctctgtcctt
cgcgaggccaatcaggccatcaaccccaaactcatccagatggcgggggacagaggaggt
cgaggccggggaggcagaggtgggcatagggatgatcgggaccggttctcaagtggaagg
cgagactttggcagcttcagggaccgcgacaacgaccggggctatgacaacggaccaaag
aaagcctttggcaacaagactcaaaacggagggggatacggctcaaatggcagtttcaat
ggcagtgggggtaactcctatggtggtggtggtggtggttatagcagcaatggacaggcc
aaccatggtgttccgtttgtgggccaaaccttccagaatcagcagtttggtggcgctaac
cagtcaggggcacttcagaatggcatgaaccaatcacagttcccatttaatccacagcaa
cagccaccccaaccaatggcgcagccactgatgccgttcccccccatgcctccatctttc
cctcagtaa
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