Clupea harengus (Atlantic herring): 105892357
Help
Entry
105892357 CDS
T09045
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
char03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105892357 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105892357 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105892357 (cpsf6)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105892357 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
105892357
NCBI-ProteinID:
XP_031414989
Ensembl:
ENSCHAG00000009684
UniProt:
A0A6P8ESF2
LinkDB
All DBs
Position
21:6027097..6041951
Genome browser
AA seq
641 aa
AA seq
DB search
MADGVDHIDIYADVEEDFNQGDDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDNLPQPA
GSEDRKGPSSNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSVGINDVLEIKFFENRAN
GQSKGFALVCVGSDASSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSSSGTQT
GQMSGEGKAGPPGIGPRGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPFPGPGMRPPD
HITHRHPNSQLMDMNFNCFQPGRDGSWRPRGGMQGPPRPPPGPPGPPGPPGPPPPGQGLP
PPLSGPPNRGDRPPPPVMFPGQFGQPHMGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFP
PRPPGPIGPPMALAPPPHMQGPPPGGPPPAPHVNPAFFPPPGNNNMPSSDRGGPPPNDPY
GRPPPYDRGDYGPGGSNPRPPLIPDFGLRPLREPWINEGLADLKQGGRHLPSASDAGEMD
SARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSAD
DRCKVLISSLQDCLHGIESKSYGSASRYASDNQITAHTMGRERSRERDHSRSREKSRRHK
SRSRDRHEDYYRERSRERDRHRERDRDRERDREREREYRHR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggtgtggatcacatcgatatttacgcggatgtagaagaggactttaatcag
ggcgacgattacccagtacacgaccagatagacctatatgatgacgtaatctctccatct
gccaacaatggggatgccccagaggaccgggactacctggacaaccttccccagcctgcg
ggctctgaggatcgcaagggcccctcatccaacgtggtctacacgtacacgggcaagagg
attgcactgtacattggcaacctcacatggtggacgaccgatgaggatttgacagatgcc
attcgctcagtaggtattaatgacgtgctggagatcaaattctttgagaaccgtgccaat
ggccagtcaaaagggtttgcgctggtgtgtgttggctctgacgcctcttccagaaagctg
atggacctgctttccaagcgggagcttcatgggcagaaccccatcgtcacaccatgtaac
aaacagtccctcagccagtttgagatgcagtccaggaaaagttcgtcaggcacacagacg
ggccagatgtccggagaggggaaggccgggccccccggtatcggcccccgcggcttcccc
atgggacgaggtcgaggacgcttccctggccccccgggaccagggggagaccgtttcccc
ggcccagttggacccggaggtcctccacccttcccagggcccgggatgaggccaccagat
cacattacccataggcaccccaacagccagctgatggatatgaatttcaattgcttccag
ccggggcgcgatgggagctggcgacccagaggaggcatgcagggaccccctcgtccccca
cctggcccacctggaccccctggccccccgggtccccctcctccgggacaagggttgccc
ccacccctctccggcccccccaaccgaggcgatcgcccccctcccccagtcatgttccca
ggccagtttggccagccccacatgggacccctccctcccggtccacccccaccaggctac
ggcccccctcccggtccccctccaccccaacaaggcccacctcccccaggtcccttccca
ccccgccctccaggtccgataggcccacccatggccctggcacctcctccacacatgcag
ggtccacccccaggggggcctccccctgcccctcacgtcaaccctgccttcttcccccca
cctgggaacaacaatatgccatcgtcagacagaggaggcccccctccaaacgacccgtac
ggcaggccgcctccttatgacagaggagactatggtccaggtggaagcaacccgagaccc
ccgctaatcccagactttgggctcagacccctgagagagccctggattaacgagggtttg
gccgatctgaaacagggaggcaggcatttgcccagtgccagtgacgcaggggagatggat
tcggcgcggacccctctgagcgaagcggagtttgaggagatcatgaaccgtaacagggcc
atatccagcagtgctatctcacgagcagtctctgacgcaagtgcagctgactatggcagt
gcgatagagacactagtgacggccatctctttgataaagcagtctaaagtgtctgcggac
gaccgctgcaaagtcctcatcagctctctgcaggactgcctgcacggcatcgagtcaaag
tcatacggctccgcctccaggtacgcctcagacaatcaaattacagctcacacaatggga
agagagcgctcacgtgaacgtgaccacagccgctcgcgagagaagagtcgccggcacaag
tcgcgcagccgcgaccgccacgaggactactaccgggaacgcagccgcgagcgcgaccgc
cacagagagagggaccgcgaccgcgagagggaccgcgagcgtgagagggagtaccgtcac
cgctag
DBGET
integrated database retrieval system
