Clupea harengus (Atlantic herring): 105892422
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Entry
105892422 CDS
T09045
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
char04054
]
105892422 (nlrc5)
Pattern recognition receptors [BR:
char04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
105892422 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
AAA_30
NOD2_WH
Atypical_Card
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105892422
NCBI-ProteinID:
XP_031420750
UniProt:
A0A6P8FAF6
LinkDB
All DBs
Position
3:complement(19597790..19626773)
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AA seq
1711 aa
AA seq
DB search
MERAVWLVDYFRDAGPVACGRFLETVCMCCENMPMFLESQLLSVSGSMTGDVENQHQAER
STTAPIRVKRPRLDHVHSYAGATKSLLLQKHETITKNVISAVCLDETWVSLRRRNVPRGR
EKTARAHVATPGSPDLQDAEEGGVEDRVAVTSLLRTAGQATVLLGAAGSGKTLLMYSLGQ
LWAQGAYPALKLFFLLEFRQLNSVSRPLSLKDLLFRFFLPADSDEQAEAVLDYVISNPEK
VCFIFDGYDEFWGKFTNDGVLQDPFDPHRPLPMAELLSGLCGQKILPWCTLLVTCRPRDV
ADLFEGSGYLIGELLGFDLERIREYARRYFWERDEALKERAVSHLTSNRLLLPMCHVPAL
CLICCVCLDHLFSREGLDTTSVLPATLTQIYFQVLAAFLSRHTGGEASAQQGSVTHALDN
HGPPIRELGRLALEGLDQSRIVFPVERLQPDLIEFGTRTGLLCPVDLRLEDGVRQPGVSF
MHLTMQEFLAGLHLMTSAEVSDAQFKKKLTLKTRWTSKNEPKTIFTDSLQLYLCGFLASA
CTPYLIQLANGGGKHVVQKRQSHVVRVLENFAGSASLTGPKVVELCRCAHESQDVQLAAK
VGSRKCFELRNIRVTPIDLEVLAFVVSAAEESVTLDFGGCSMDPGCLDLLDGCRNVEALI
FHSRKYNDVFAEALSAVVPKLQRLKRLQFANAKLTDVGAAKLVQALEKCPLIEHVDLSNN
NITDRGLEKLVDSFPKLSNLATVLLGRNTYTRSRLVKLVEKVLTCETLHLVLVKGAIEKT
NEGQEFNLHFMSRQSVNNFKNHNQDSETSKTLVWTNDNLSVTRLKALCEALKSCPSLTKL
DLSRNALGNQGVKKLLALLPTLETIQEVIVSKNGVDMDGMVLIANLLSTCDRLIQVDASH
CGEEKLVLKFLPSKSNLTTSPRQTRSQMQKSLADSSAEQHRDQLKKTFSLTHSNIQPAKM
DTLCLKLGQFPGVLDLDLSFGTFDDSTIYKLMENLPSMMCLQLLRISHVQMSTGGALMLV
RSLADCPRVKAVELRPRGEAFIKFEEVKAEYTTCRLSQCKLTREDVEELSGILEHCTRLS
DLDLSSNLLRDDGVQVLMGRLPKLQIGNSVNLNDNRLTAAGALHLVNSINTCERVVAVAV
SLGAEEKCLIRFMQESVQEKSLSLRECNFRAEHLQKLMDILCKCHKLVKLELLCNTLHSG
SLSILNNLAQLSSLQSLEMKRNGLGSEEIEEFFQHMSQHQPQWTIRIEEEWMREEAVVVL
VAGCLNVNANIQEIGVTNSLLTVSLTRNAHLANHSGNRGNSVGTASSLKSVRFANSEIKG
HHLLLLQPVLSASALLQEIDLSLNRFGREGADFISTLPDLVNLRKLSLHTKHSTEDEVFM
IIAALRRCPNLESISLSGYTISDEEAVELGRTFPSLPHLQSISLSECFGWSPQGAVDLVM
GIAQCSPLEGVRLDRLELDKDAVSCLAQGLQQMTSLRSLRLNHISMTTSTPEEEDFTVQS
LMLSLQGRTGIEQIELEGLRLGDCGVQTLIQHIPTWTKLRQISLAEPCSGMSDSTGERLV
QTLAQCTALEELNLRKNSLGSASAAKLGKVLSGLPRLRVLNLSENHFTADDAVSLSAGLT
HLKYLTKLQLIAIGTSELSSVADSLRHCVNIEDVSLAWNSCGNEVAVMLAEVMSKCVKLR
RLDLESNRISMEGARVLAESLRFSFTIEVVR
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggagagggccgtctggctggtggactacttccgagatgcggggcctgtggcgtgtgga
cggttccttgagactgtgtgcatgtgctgcgagaacatgcccatgttcctggagtcgcag
ctcctttcagtctctgggtccatgacaggtgacgttgagaatcaacatcaagctgagagg
tcaaccactgcaccaatccgtgtgaagcgtccacgactagaccatgtgcatagctacgct
ggggccactaagtcattactgctgcaaaaacacgaaaccatcacaaagaatgtcatcagc
gcggtgtgtctggatgagacgtgggtcagcctgcgacgcaggaacgtccctcgagggcga
gaaaaaacagctagagcacacgtcgcaacccccggctctcccgacctccaggacgcggaa
gagggtggcgttgaggacagggtggcggtgacgtccctcctgaggactgctgggcaggcg
acggtgctgctgggggcggcgggctcagggaagaccctgctgatgtacagcctaggacag
ctctgggcccagggcgcctacccagccctcaagctgttcttcctactggagttccgccag
ctcaactccgtctcccgcccgctctctctcaaagacctcctcttccgcttcttcctcccc
gctgacagcgacgagcaggccgaggccgtgcttgactatgtcatctccaacccggagaag
gtgtgcttcatatttgatggctacgatgaattttggggcaagttcaccaacgatggtgtt
ctccaggacccctttgacccacaccgccccctccccatggcagagctcctgtctggactc
tgcgggcagaagatcctgccctggtgcaccctgctggtcacttgcaggccccgtgacgtg
gccgacctgtttgaaggctcaggctacctcattggggagcttctgggctttgacctggag
cgcatccgggagtacgcgcggcggtacttctgggagcgggacgaggcgctgaaggagcgg
gccgtaagtcacctgacctcgaaccgcctcctgctccccatgtgccacgtaccggcgctc
tgcctcatctgctgtgtgtgtctggaccacctcttctccagggagggcctcgacacgacc
tcggtgctccctgccaccctcacgcagatctacttccaggtccttgctgcattcctgagc
cgacacactggcggagaggcgtccgcacagcagggaagtgtcacacacgccctggacaac
cacggtcctccgatccgagagctgggccgtctggccctggaggggctcgaccagagccgg
atcgtgttccctgtggagagactccagccggacctgatagagtttggcacccgcactggt
ctcctctgcccggtggacctgagactggaggatggggtgaggcagccgggggtgtccttc
atgcacctcaccatgcaggagtttctcgctgggctccacctcatgacaagcgcagaggtc
tcagacgctcagttcaagaagaaactgaccctcaaaactcgctggacgtccaaaaacgag
cccaaaaccatcttcaccgactctctccagctctacctgtgcggcttcctcgcatccgcc
tgtaccccctacctgatccagctggctaatggtggtggcaagcacgtggtccagaagcgg
cagtctcacgtggtgagggttctggagaactttgcgggcagcgccagcctgactgggccc
aaggtggtggagctgtgccgctgcgctcacgagtcgcaggacgtgcagctggcagcgaag
gttggctcccggaagtgctttgagctgaggaacatcagggtgaccccaattgacctggag
gtcctggcctttgtggtgtcggccgccgaggagagcgtcactctggactttggaggctgc
tccatggaccccgggtgtctggacctgctggatggctgcaggaacgttgaggcgctcatt
tttcacagccgaaagtataatgatgtctttgctgaggctctgtctgctgtcgttccaaaa
ctccaaaggctgaagcgactacaatttgcaaatgccaagctaactgatgttggagctgct
aaactggttcaggccttggagaaatgcccactgattgaacatgtggacctcagcaacaac
aacataacagaccggggtctggagaagctagtggacagtttccccaagctctctaacctg
gcaacagttttgctggggaggaatacttatacccgcagccgactggtcaaacttgttgag
aaagtgctgacctgtgaaactcttcatcttgtgcttgtgaagggagcgattgaaaagaca
aatgaaggacaggaattcaacctccattttatgagcaggcaaagtgtgaacaacttcaaa
aatcataatcaggacagtgagacttcaaagactcttgtctggacgaatgataacctcagt
gtgacccgtctgaaggccttgtgtgaggcactgaagagctgccccagcttgaccaagctt
gacctgtccaggaacgcgctggggaatcaaggagtgaagaaactgcttgcgctcttgcca
accctggagaccattcaggaagtgattgtcagtaagaatggcgtggacatggacggtatg
gtgctcatcgctaacctgctctccacctgtgatcgtctgatccaagtggatgccagccac
tgcggagaggaaaaactcgtcttgaagtttcttccgagtaaaagcaacctgaccacatcg
cctaggcagacccgatcccaaatgcagaagagccttgccgacagcagcgctgaacagcac
agggatcagttaaagaagacattcagtctgacgcacagcaacatccagccggccaaaatg
gacacactttgccttaaactggggcagtttcctggcgtgctggatttagacctctctttt
gggacgtttgacgacagtaccatctataagctgatggagaaccttcctagcatgatgtgt
cttcagctgctgaggataagtcatgtccagatgtccacaggcggggccctgatgttggtc
cggtccctggctgactgcccgcgggtcaaagcagtggagctcaggccccgaggagaagcc
ttcatcaagtttgaggaggtgaaagcagagtacaccacctgcaggcttagtcagtgtaag
ctgacgcgcgaggatgtagaagaactttctggaatcctggagcactgtactcgtctctct
gaccttgatttgtccagtaacctcctgagagatgacggtgtgcaagtcttaatgggccgg
ctcccaaagctgcagattggaaactccgtgaatttgaatgacaacaggctcactgcagct
ggcgctctgcacctggtcaactccatcaacacctgtgagagagtggtggcagtggcagtc
agtctgggggctgaggagaagtgtctcatccgcttcatgcaggagagcgtgcaggagaag
agcctaagtctgagagaatgcaacttcagagctgagcatctgcagaaacttatggacatc
ctctgcaaatgccacaaactggtcaaactagaactgctgtgtaataccctgcacagtgga
agcctgagcatactgaacaacctggcccaactgtcctcactgcagagccttgaaatgaag
aggaatggattgggttctgaggagatagaggagttcttccaacacatgagccagcatcaa
ccccagtggactatcaggattgaggaggagtggatgagagaagaggcagtggttgtcctt
gtagccggctgcctaaatgtgaacgccaacattcaggagattggggttaccaacagtctc
ttgacagtgtctttgacaaggaatgcccatctcgcaaatcacagtggtaaccgtggtaac
tctgtgggcactgcctcttccttgaagtctgtcagatttgccaacagtgaaataaagggc
caccatctcctcctcctccagccggtgctctccgcctctgcactactgcaggagattgat
ctgtctctcaacagatttgggagagagggagcagacttcatttctaccctaccagatctc
gtgaacctgagaaaactcagccttcatactaaacattccactgaggatgaggtgttcatg
atcatcgctgcattgcggagatgtccaaatcttgagagtatttctttgagtggctataca
atcagtgacgaggaagcagtggagctcggaagaactttccccagtctgcctcatctccag
tccatcagcctgtctgagtgttttggctggtcgccgcaaggagctgtggacctggtcatg
ggcattgctcagtgctcgccactagagggcgtcaggctggaccgtctcgagttggataag
gacgcggtgagctgtctggcccaaggacttcagcagatgacctctttaaggtctctgaga
ctgaatcatatttccatgacaacctctacacctgaggaggaggacttcactgttcagtct
cttatgctgtcactgcaagggcgtactgggatagaacagattgagttagagggcctgagg
ttaggtgactgtggtgtacagacgctgattcaacacatccccacctggacaaagcttaga
cagataagcctggcagagccatgcagtggcatgagtgacagcactggggagaggttggtg
cagacgctggctcagtgcacagcactggaggagctaaatctccgtaagaacagcctgggc
tctgcatctgcagccaaactgggcaaagtcctgagtggtctcccacgccttagggtcctc
aatctctcggagaaccacttcactgctgatgatgctgtgagcctgtctgcaggactgaca
catctcaagtacctgaccaaactacagttaattgccatcgggacatctgaactttctagc
gtggctgactccttaagacactgcgtcaacattgaagatgtcagtttggcatggaacagc
tgtggtaatgaggtggctgtgatgctggctgaggttatgtccaagtgtgtgaagttgagg
cggctcgatttggagagtaacagaatcagtatggaaggagccagagttctggcagagagc
ctgcgattctccttcaccattgaggttgtgaggtaa
DBGET
integrated database retrieval system
