Clupea harengus (Atlantic herring): 105893917
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Entry
105893917 CDS
T09045
Symbol
rbfox3a
Name
(RefSeq) uncharacterized protein rbfox3a
KO
K14946
RNA binding protein fox-1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105893917 (rbfox3a)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
105893917 (rbfox3a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
DUF16
ATG16
RRM_5
Laminin_II
XhlA
DUF1664
BRI3BP
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
105893917
NCBI-ProteinID:
XP_031421948
UniProt:
A0A6P8F0A7
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All DBs
Position
1:16053945..16112161
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AA seq
484 aa
AA seq
DB search
MDNDEPDASMANLIAQNVTEKISALMELKFAELQSSLTILGSRIDDNSKRLTEAESRISE
NEDRTSSLENKVAHLEQKVKSLADRTEASENRSRRDNIRIIGLKEGTEGKEGKNAVIFFE
TWLHDTLDLKTKRGFIKIDRAHRALGPRKSNSNRPVIIKLHNYGDKQIILSAFREKGDIL
DQGNKIYIRQDLSAAVREARRKFNDTCEQLIQRGIRFQMRYPATLFLTVQGELHSFETPQ
EQAEEVAQTEGSQQMQLQSSDASEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI
IFNERGSKGFGFVTFETSADADHARDKLNGTIVEGRKIEVNNATARVMTNKKVANPYSNG
WKLNPVVGAVYGPEFYAVTGFPYPSPGAAVAYRGGHLRGRGRAVYNTFRAAPPPPPIPAY
GAVVYQDGFYGAEIYGGYAAYRYAQPAATAAAAYSDSYGRVYATADPYHHHTLGPAAAYS
VGTM
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgacgaacctgacgctagcatggccaacttgattgcccaaaatgttacggag
aagattagcgccctaatggaattgaagttcgctgagctacagtcatccttaaccatactg
ggtagtcgcattgacgacaacagcaaaagactaactgaagctgagagtcgcatctctgag
aatgaagaccgtactagctctttggagaacaaagttgctcatcttgaacaaaaagttaag
tccctagctgaccgcactgaggctagtgaaaaccgaagccgtagagataatattcggatc
atcggactcaaagaaggcacagaagggaaagaagggaaaaatgcggtgatattctttgaa
acttggctacacgacacactggatttgaagaccaaaagagggttcattaagattgatagg
gctcatagagcccttggcccgcgaaagtcaaactctaacagaccagttatcataaaactc
cacaactacggcgacaaacaaatcattctctcagcgttcagagagaagggtgacattctc
gatcagggcaacaagatttacattcgtcaagacctatcagcggcagtgagggaggcaaga
cgcaagttcaacgacacctgcgaacaactcatccagaggggaatacggtttcagatgcgc
tacccagccactcttttcctcacggttcagggagagttgcattcctttgagactccccag
gagcaggcagaggaggttgcgcagacagaaggctcccagcagatgcagctacagtcgtcg
gacgcctcagagaagcagcagcccaagcggctccacgtctccaacattcccttccgcttc
agggaccccgacctgcggcagatgtttgggcaatttgggaagattttagatgtggagatc
atttttaacgagcgcggctccaagggctttggctttgtaacgtttgaaacgagtgcagac
gcagaccacgctcgggacaaacttaacggtacaatcgtagagggacgcaagatcgaggtc
aacaatgcaacagcgagagtaatgacgaataagaaagtggccaacccttactcgaacggc
tggaagctgaatccagtggtgggcgctgtctatggtcctgaattctatgcagtaacgggg
tttccctacccgagcccaggggcagcggtggcgtaccgaggaggtcacctgcgggggagg
gggcgggccgtctacaacacattccgtgccgcccctcctccccctcccatccctgcctat
ggagccgtggtctaccaggacggcttctatggcgcagaaatctacggaggctatgcagca
tacagatatgcccaaccagctgcaacagctgcagccgcctacagtgacagctatggacgt
gtgtatgccaccgcagacccttaccaccaccacacgctgggtcctgccgccgcctacagt
gtgggtaccatgtaa
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