Clupea harengus (Atlantic herring): 105896247
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Entry
105896247 CDS
T09045
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105896247 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105896247 (ddx46)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105896247 (ddx46)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 related factors
105896247 (ddx46)
Complex B
105896247 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
105896247
NCBI-ProteinID:
XP_031427857
Ensembl:
ENSCHAG00000006882
UniProt:
A0A6P8FXF4
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All DBs
Position
8:complement(14166305..14175474)
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AA seq
1072 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSNSRSPDKRSKKDEGAVSRNRDRTRRERSRSRDRRRSRS
RDRKRPRRSRSRERRRSRSRDRRRTRSRSRSRGRRSRSTSPSKARKTDDSKEKSSNGDSM
SEKKKVKEEKEEEKVEDQDFDHNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEE
MKQGKKWSLEDDEDDDEEGPAPEEEEEEEEAAAAAAAAAEVEEEEEEEKPQEAEEEEKIT
AMEEEPGEEVDTLDAYMEEVKEEVKKFNMGTMRGKNDMKGGIMTVSKVINVVKTKKMPHT
NKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHKKIEYEPYRKNFYV
EVPELAKMTPEEVSVYRLELEGIAVKGKGCPKPIKSWVQCGTSMKVLNALKRHSYEKPTP
IQTQAIPAIMAGRDMIGIAKTGSGKTIAFLLPMFRHIMDQRPLDEAEGPISVIMTPTREL
ALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRV
TNLRRVTYVVVDEADRMFDMGFEPQVMRIVDNIRPDRQTVMFSATFPRAMEALARRILSK
PIEVQVGGRSVVCSEVEQHVIVMEEESKFLKLLEILGHYQEKGSVIIFVDKQEHADHLLK
DLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVINYNCP
NHYEDYVHRVGRTGRAGNKGYAYTFITFDQSRYAGDILKALELSGTVVPDELEKLWASFK
DQQKLEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQI
ESMFNSKKRVKDLSAPGGGGSSAASNAAAAANVSSLTGLAMPSAGNIQKLEIAKKLALKI
NAQKNLGAEAQDVMQQATNAILRGGTIIAPSVSAKTIAEQLAEKINAKLNYTPVEKLEEE
RQAAEQAESITRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEP
KEGERKIYLAIESASELAVQKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgggtagagagtcaaggcattacaggaaacgctcgacatcaagaggtaggtcgggaagc
cgatcgaacagccgttcgcccgacaaacgctcaaagaaagatgagggagctgtctctaga
aaccgagaccgcaccaggagagagcgatcccgcagcagagatcgccgccgatcacggtca
agagacaggaaacgccctcggcgatcgaggagtcgggagaggcgtagatcacggagcagg
gatcggaggaggaccagaagtcggagcaggagtcgaggtcggcggtcacgatcaacaagt
cccagcaaagccagaaagactgatgacagcaaggagaaatcaagcaatggagattcaatg
agtgaaaagaaaaaagtgaaggaagaaaaggaggaagaaaaggttgaagatcaagacttt
gatcacaacacactggaggaagaaatgaggaaaaggaaagaacgtgtggagaaatggcgt
gaggagcagaggaagaaagccatggagaatattggagagataaagaaagaactagaggag
atgaaacagggcaaaaagtggagcctggaggatgatgaggacgatgacgaagagggccca
gcaccagaagaggaggaggaagaggaggaggcggcggcagcagcagcagcagcagcagag
gtggaggaggaggaggaggaagagaagccacaagaggcagaggaggaagagaagatcacc
gccatggaagaggagccaggcgaggaagtagacactcttgatgcctacatggaggaggta
aaagaggaagtgaagaagttcaacatgggcaccatgaggggcaagaacgacatgaagggt
ggtattatgacggtatccaaagtgataaatgttgtaaagacgaagaaaatgcctcacaca
aacaagaagaaaggggagctgatggagaatgaccaggatgcgatggagtactcctcagag
gaagaggaagtcgatctgcagacagctctgactggctttcagaccaaacagcggaaagtg
ctggaacctgtggatcacaagaagatcgagtatgagccataccgcaagaatttctatgtg
gaagttccagaactggccaaaatgacacccgaagaggtgagcgtctaccgtctggagctg
gagggaatcgcagtgaaagggaaaggctgcccgaagcccatcaagtcatgggtgcagtgt
gggacctcaatgaaggtcttaaatgctctaaagaggcacagctacgagaagcccaccccc
attcagactcaggccatcccagccatcatggcgggtcgagacatgattggcattgctaaa
actggcagtggcaaaaccattgctttcctcttacccatgtttcgccacatcatggatcag
aggcccttagatgaggcagagggccccatttctgtgatcatgacgccaacacgagagcta
gctctgcagatcaccaaagagtgtaagaagttctccaagcccctgggactgagagtggtg
tgtgtgtacggaggcaccggcatcagtgagcagattgctgagcttaagagaggagcggag
atcatcgtctgtactccagggaggatgattgacatgctgggtgccaacagtggccgagtc
actaacctgcgcagagtcacatatgtggtggttgatgaagctgacagaatgttcgacatg
ggttttgagcctcaggtgatgcgaattgtggataatatccgacctgatcggcagacggtc
atgttctcggccacttttccccgcgccatggaagctttggccaggcgaatcctatccaag
cccattgaggtgcaagtgggaggcaggagcgtggtgtgctccgaagtagagcagcatgtg
attgtgatggaggaggagagcaagtttctgaagttgttagagattctgggccactaccag
gagaagggttcagttatcatctttgtggacaagcaggagcacgcagaccacctcctcaaa
gacttgatgaaggcctcttatccctgcatgtccctacatggaggcatcgatcagtacgat
agagacagtatcattaacgacttcaaaaacggcgcctgtcgcctcatggtggccacgtct
gtggcagctcgaggactggacgtcaagcagctgatcttggtcatcaactacaactgccca
aaccactatgaggactatgtccacagagttggacgtactgggcgtgcagggaacaaaggc
tacgcatacacatttatcacatttgaccaatcccgctacgctggagatatcctcaaagct
ctggaactttccggtacggtcgttcccgatgagctggaaaagctgtgggccagctttaaa
gaccagcagaagctcgaggggaaggtcatcaagagtagcagtggcttctctggaaagggc
ttcaagtttgacgagactgagcacgccctggcgaacgagcgcaaaaagctccaaaaagca
gctctgggtctgcaggactctgacgatgaggatggagcgctggatatcgatgagcagatc
gagagcatgtttaactcaaaaaagcgggtgaaggacctctctgcccctggaggcggcggc
tcatctgcagccagtaacgcagcggcggctgccaacgtgagcagcctgactggcctagcc
atgccctctgcaggaaacatccagaaactggagatcgccaagaagctggctctgaagatc
aatgcccagaagaacctcggagcagaggctcaggatgtgatgcaacaggctaccaatgcc
atcttgagaggaggcaccatcatcgccccgtcagtctcggcgaagaccatcgcagaacag
ctggctgagaagatcaatgctaaactcaactacacccctgtggaaaaactggaggaggag
aggcaggcggcggaacaggccgagagcatcacaagatacgaagaggagctcgagatcaac
gacttccctcagacggcaaggtggaaggtaacgtccaaagaggctctgcagaggatcggc
gagtattcagaggcagccataaccattagagggacatacttccctccaggaaaggagccc
aaagagggagagcgaaagatctacctggccattgagagtgctagcgaactggctgtgcag
aaagctaaagctgagattacaaggctgataaaagaagagcttatccgactgcaaaactcc
taccagcctaccagcaaaggaagatacaaggttctctag
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