Clupea harengus (Atlantic herring): 105896347
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Entry
105896347 CDS
T09045
Symbol
usp48
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 48 isoform X1
KO
K11858
ubiquitin carboxyl-terminal hydrolase 48 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105896347 (usp48)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105896347 (usp48)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105896347 (usp48)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105896347 (usp48)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105896347 (usp48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUSP
ubiquitin
Motif
Other DBs
NCBI-GeneID:
105896347
NCBI-ProteinID:
XP_031424417
Ensembl:
ENSCHAG00000016461
UniProt:
A0A6P8FMM5
LinkDB
All DBs
Position
5:31471407..31516847
Genome browser
AA seq
1066 aa
AA seq
DB search
MKCHHKCITSNGSIGNATLRMAPRLQLEKAAWRWVETVKPEDIKNEHIELAYRIALSACQ
RGTCRRNCKGNPNCLIGIGEHLWLGDIDENTFHNIDDPSSERRDKNTFVGLTNLGATCYV
NTFLQVWFHNLELRQTLYLCQNAWVESADSEKEPQTICEHLQYLFALLQNSSRRSIDPSG
LVKALGLNTGQQQDAQEFSKLFLSLLEEFLLKQKNPNLQNVIQEQFCGMISYVTVCDQCG
RSSSLPSRFYELELNIQGHKNLMECLTEFLKEEKLDGDNRYHCESCQTKQNATRHIKLQS
LPRTLNLQLMRFVFDRKTGHKKKLNTFINFPEILDMGPFMERKEEKCVFELSAVLIHRGI
SAYSGHYIAHVRDALSNDWYKFNDEEIEKMEGKKLQLGLEEDIAETVKISQSRKPKCSRG
YHCSRNAYMLVYKRQPEQDDRNDTNAVVPEFLETLVAKDNRKFEEWCSELAEMRKQSVDK
GKAKHEEVKGLFTLLPVEDGQPYEFVPLDWLKKWLDDSITTKAIDNGHFLCSHGKLHPDK
IGEAKRISLKAASLLFSRYGGGPRLDRSSLCRECVTQRCQVLRLKNQLTEDYKDMSILIK
APSQSGKGLWVGKLSLRIWRQLALEQLEDDEEHTKHGDHKTNGDRSNITRSKGAKTIDGE
DVDTEGMKIFNEDILCPHGGLNILESERRLVSVEAWDKLKVYFPKAPEFTYQHEPCQQCL
RREREDRQNEELNKMMANEQKSALLNLFQEKNRPTLQKWPEETDVLYIVPPFFLAEWRKF
IRRPSKSTPVSSVGNSILLCPHGGFMFTHESMLLGDAEHVALLWPDEWEVIRTHFLVDQP
ISLSRIKAEPDITDRVEYHTRPELCEECREGFMFQQQRDMREYTQATVYVRKVINNKRAL
KDDAPSLNVSGSEAEEEKETKVDGEKDPDFSQLENGAKRKKIISGVGIAVQHSVSKASSD
KGIRRSTRHHKLRGEKALIVSANQTLKELKIQIMHAFSVAPFDQNLSIDGRSLTDDSATL
GSLGVTPECVICLKADEPLTDYAAIDDVYQVCLPEEGFKGTGLLGH
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtcatcacaagtgcattacatctaatggtagtatcggaaatgcaacgttaagg
atggcgcctcggttacagctagagaaagctgcttggcgctgggttgagacggtgaaacca
gaagatattaaaaacgaacatatcgaattagcttatcgaatcgctctgtctgcgtgccaa
agaggaacatgcaggaggaattgtaaggggaacccaaattgcttaattggaattggagaa
catctctggttgggggatatcgacgagaacactttccataacattgatgatcccagctca
gaacgaagagacaagaatacatttgtcggtttaacaaacctgggggccacctgctacgtc
aacaccttcctccaggtttggttccacaacctggagctccgtcaaacgttgtatctctgc
cagaacgcctgggttgagagcgcagactcagaaaaagagccgcagacaatatgtgaacat
cttcagtacctgtttgcattgctgcagaacagcagcagaagatccatcgacccgtctggc
cttgtgaaagctttaggacttaacacgggacaacagcaggatgcacaagagttctccaag
ctcttcctctccctcctggaagaattcctcctaaagcagaagaacccaaacctccaaaat
gtcattcaggagcagttctgtggaatgatttcctacgtcactgtgtgtgaccagtgcggt
cggtcttcctccctaccctcccgattctacgaattggagcttaacatccaaggacacaaa
aatctcatggagtgtctcacagagttcctaaaggaggaaaagctggatggggacaaccgc
taccactgtgagagctgccagactaaacagaatgccacacgtcacatcaaattacagagt
ctccctcgaacccttaacctgcagctcatgcgctttgtcttcgacaggaaaacgggccac
aaaaagaagctaaacaccttcattaatttcccagagatcctggatatggggcctttcatg
gaaagaaaagaggagaagtgtgtttttgagctgagtgctgtacttatccatcgaggcatc
agtgcgtattcaggacactacatcgctcacgtgcgagacgcgctctccaacgactggtac
aagttcaacgacgaggagattgagaaaatggagggaaagaaactccagctgggacttgag
gaggatattgcggaaactgtcaaaatatcccagagccggaagcccaagtgtagcagagga
taccattgctctcgaaacgcctacatgctggtgtacaaacggcaaccggagcaggacgac
aggaacgacaccaatgcagtagtaccagagttccttgagacactggtggccaaggacaac
aggaagtttgaggagtggtgcagcgagctggccgagatgaggaagcagagcgtcgacaag
ggcaaggccaagcacgaggaggtgaaggggctcttcacgttgttgcccgtggaagacggc
caaccctatgagtttgtgccattggactggttgaagaaatggctcgatgactccatcacc
accaaggcaatagacaacggccacttcctctgctctcacgggaagctccaccctgataag
attggcgaggccaagcggatctcccttaaagcagccagcctcctttttagccgatatgga
ggaggcccccggctagaccgttcatccctgtgtagagagtgtgtaacgcagcgctgccaa
gttctgcggctcaagaaccagctcactgaggactacaaggacatgtccatcctcatcaaa
gcaccgtcacaaagtggtaaaggtctttgggtgggcaaactgtctctgcgtatctggagg
cagctggccctggagcagttggaggacgacgaggagcacaccaaacacggcgaccacaag
accaacggggatcgctccaacatcaccaggagcaaaggtgcaaagaccattgacggagag
gacgtggataccgagggcatgaagatcttcaatgaagacatcctctgtcctcatgggggc
ctcaatatcctggagagtgagaggaggctggtgtctgtggaggcgtgggacaaactgaag
gtgtacttccccaaagcacctgagttcacctatcagcacgagccctgtcagcagtgtctg
aggcgtgagcgagaggacagacagaacgaggagttgaacaagatgatggccaacgagcaa
aagagcgctttactcaacctgttccaggagaagaaccgaccaacgctgcagaaatggcct
gaggaaacggatgttttatacatcgttccgccattctttctggctgaatggaggaagttt
atcaggagaccttccaaaagcacacctgtgtcgagcgtgggaaacagcatcctgctctgc
ccccacggcggcttcatgttcacccacgagtccatgctgttaggagacgctgagcatgta
gctctcctgtggccggacgagtgggaggtgatccggacccatttcctcgtggaccagcct
atttctctatccaggataaaagcagaacctgacatcaccgacagggttgaatatcacacg
cggccagagttgtgtgaagagtgccgggagggcttcatgttccagcagcagagggacatg
agggagtacacccaggccaccgtctacgtgcgcaaggtcatcaacaacaaaagggcactg
aaagatgatgctccatcactcaatgtgagcggctccgaagcagaagaagagaaggaaacc
aaagtggatggagaaaaagacccagactttagccagttggagaatggcgccaagcggaaa
aagataatcagcggtgttggtattgccgtgcagcattcagtatccaaggcctcctctgac
aagggcatccgccggagtacccgccatcacaagctccggggagagaaagccctcatcgtc
tccgccaaccaaacgctgaaggagctcaaaatccagatcatgcacgccttctccgtcgct
ccatttgaccaaaacctgtccatagatgggcggagcctcaccgatgactccgccactctg
ggtagcctcggggtgacaccggagtgcgtcatctgccttaaggctgacgaacctttaaca
gattatgctgcaatagatgatgtataccaagtgtgtttgcctgaggagggatttaaaggc
acagggcttcttggacattga
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