Clupea harengus (Atlantic herring): 105896526
Help
Entry
105896526 CDS
T09045
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105896526 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
105896526 (lig4)
Enzymes [BR:
char01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105896526 (lig4)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105896526 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
BRCT_2
RNA_ligase
THAP
Motif
Other DBs
NCBI-GeneID:
105896526
NCBI-ProteinID:
XP_012678745
Ensembl:
ENSCHAG00000023608
UniProt:
A0A6P3VS13
LinkDB
All DBs
Position
21:104162..110566
Genome browser
AA seq
910 aa
AA seq
DB search
MEENSARVSGPQDSVAAQVPFIHLCSTLEKIQRAKTRPDKVKSLQEFMDSWRKFHAALYE
AKSDPSDSFYPAMRLLIPHFERERMAYGIKENMLAKLYIEVLGLPRNGPEANKLLNYRAP
TTSQEETGDFAGMAYFVLKKRCDSQGKLTIKQVNDFLDSVAIHNGQKQKDQVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHKDAPELYNVTTDLNKVCLKLHDPTVSL
SEVSIGVFSAFKPMLAAAASIQQVERQPVGKMFFIETKLDGERIQLHKDGDVYKYYTRNS
FEYSQQFGTSPLEGSLTPFIHNVFKPHVVQCILDGEMMAYNPSAETFMQKGSKFDIKRLI
EDSELQTCFCVFDILLLNDQKFANEPLKNRHGALLTAFTPVKGRIQLVPRVEARTTQQVV
DALNEAIDNREEGIMVKDPLSIYKPDKRGEEWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVSETPLAGENPSVFHTICRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
AAILCATEKPEVYIEPCKSVIIQVKAAEIVGSDMYKTNCTLRFPRIERIREDKEWHQCMT
LDDLSQYRSKASGKLASRHFQMQEGQPDRKKRKKTVPKPKKTAGIIDHFKSQDLSAILKE
TDMFEDVEFCVINGSKEQSKAELEKGVARCGGVIVQNPGKDTYCIIAGVENMRVKNLISS
DQHDIVWASWLLECLDQTKVVPWQPRHMIHMSPSTRDHFAQEYDPYGDSYFVNTDAQQLS
EVFGRISTSSLQVLSVGHVEEKYGWEDLPTSMFRAFTAYMDSCTDIKDPTSVILGSCLDT
CALEFRFHGGTVVQKLQEGVSHVIVAEETRILDFRKLRRLFKRKFKIVKETWVTDSIRAE
HLQNDNAYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaactcagcaagggtttctggtcctcaggactcggtggctgctcaagtcccc
ttcattcacctgtgttctacccttgaaaagatccagagagcaaaaacacgcccagacaaa
gtcaaatctttgcaagagtttatggattcatggagaaaattccatgctgccctgtatgaa
gccaaatctgatcccagtgactcattctaccccgctatgcggcttcttattcctcatttt
gaaagggagaggatggcttatggaatcaaagagaatatgttggccaagctctacattgaa
gtcttgggtcttccaaggaatgggcctgaggccaataaactcctgaactaccgtgctccg
acaacttcccaggaagagaccggggactttgcaggcatggcttacttcgtcttaaagaaa
cgttgtgatagccaggggaaactaacaataaaacaagtgaatgactttcttgattctgtc
gcaatacacaacggccaaaagcagaaagaccaagtgaagaagagcctcctccatctgatc
acccagagttctgccttggaacagaagtggctgatccgtatgattttgaaggacatgaag
cttgggatcagcaaggagactgtgcttcaggtattccataaggatgcccctgagctctac
aatgttactactgacttgaacaaggtgtgtctgaagctccatgacccaactgtgtccctc
agtgaggtctccattggggttttctctgcctttaagcccatgttggctgctgctgccagc
atccagcaggtggaaagacagcctgtaggtaaaatgttcttcattgagactaagcttgat
ggagaacgcatccagctgcacaaagatggagatgtatataaatattatacacgaaactcc
tttgagtactctcaacagtttggcacttccccacttgagggctctctcacgcctttcatt
cacaatgtttttaaacctcatgtggtgcagtgtatcctggatggtgagatgatggcctat
aacccatcggctgagacatttatgcaaaaaggtagcaaatttgacataaagaggttaata
gaggactctgagttacagacgtgtttctgtgtttttgacatcctacttcttaatgaccag
aaattcgcaaatgagcccttgaaaaaccgtcatggggcccttctgacagcctttacacca
gtgaaaggtcggatccagctagtccccagagtcgaggccagaaccacacagcaggttgtt
gatgcactcaatgaagccattgacaaccgtgaagaaggaatcatggtcaaagaccctttg
tcaatctacaaaccagacaaacgtggggaggaatggctgaaaatcaaaccagagtatgta
gatggcctgatggatgagctggacttgcttatagttggtggttactgggggaaaggcagg
cgagggggcatgatgtcccatttcctgtgtgcagtatcagaaacacccctggcaggtgag
aatccatcagtcttccatactatttgccggattgggtctggctacactatgaaagagttg
tatgaccttgggctgaagttggcgaaacattggaaggtgtaccgaaaaaatgatccacca
gcagccatcttgtgtgccactgagaaacctgaggtgtacattgaaccatgcaagtctgtt
atcattcaagtcaaagcggcagagattgtgggcagtgatatgtacaagactaactgcaca
cttcgcttccctcgcattgagaggatccgggaagataaggagtggcaccaatgcatgacc
ttggatgacctcagtcaatatcggagtaaagcttcaggaaaactggcctccaggcacttt
cagatgcaggaaggacagcctgaccggaaaaaacgaaagaagactgttcctaagcctaag
aagactgcaggcattattgaccactttaagtctcaagacttgtcagccattttgaaagaa
actgacatgtttgaagatgtagagttctgtgtgattaatgggagtaaggaacagtcaaag
gcggagcttgagaagggtgtggcacgctgtggtggagttattgtgcagaacccagggaaa
gacacatactgcattattgcaggggttgagaacatgcgggtaaaaaacctaatctcttct
gaccagcatgatattgtttgggccagttggcttcttgaatgcctggaccagaccaaggtg
gtgccgtggcaaccaaggcacatgatccacatgtcaccatccacacgggaccactttgcc
caggaatatgacccttatggtgacagctactttgtaaacacagatgcacagcaactaagt
gaggtttttggcaggatctccacctcaagcctacaagtgcttagtgtaggtcatgtggaa
gagaagtatggttgggaagatctgccaacgagcatgttcagggctttcacagcctacatg
gattcctgcaccgacattaaggaccccacgagtgttattcttgggtcttgcttggataca
tgtgcacttgagttccgattccatggtggcactgtggttcaaaaacttcaagaaggggtg
tctcatgtcattgttgctgaagagacgagaatactggattttaggaaactcagaagacta
tttaaaaggaagtttaaaatagttaaggaaacatgggtgaccgactccatcagagcagaa
cacctgcagaatgacaatgcctacctgatatga
DBGET
integrated database retrieval system
