Clupea harengus (Atlantic herring): 105899779
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Entry
105899779 CDS
T09045
Symbol
cylda
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04217
Necroptosis
char04622
RIG-I-like receptor signaling pathway
char04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
105899779 (cylda)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
105899779 (cylda)
04625 C-type lectin receptor signaling pathway
105899779 (cylda)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105899779 (cylda)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105899779 (cylda)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105899779 (cylda)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C67
105899779 (cylda)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105899779 (cylda)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CYLD_phos_site
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
105899779
NCBI-ProteinID:
XP_031425037
Ensembl:
ENSCHAG00000014127
UniProt:
A0A6P8FPH9
LinkDB
All DBs
Position
6:15554436..15574316
Genome browser
AA seq
980 aa
AA seq
DB search
MSSALWSQEKPGGGSGGGCFREDWRFYMVVTECVVEKPPQKTLRIPRGSLGQACQERNSL
GRTLPPAKGKRSLRLLDQANVVLSLDERDVVELDEKLAELLFPITNCEERYSLLCNEPRL
ERARQIDCGSKVRVQLRSGDDPLPGVVRFKGSLLPDRALSGIWFGVELLEEGRGQGFTEG
SYQGQQLFRCEDECGVFVAVDKLELWEDEDDELGELEVDSVTLVDSEHDFPPLEINSRVV
VQTREGPERGTIIFYDLLPGNESLGYYVGVDMDNPIGDWDGVFDGKLLCSFASLEHTRLV
PVCDVMPEYSMQDQRPPKHSFASRGSSSDKSSSGQSKPKSKGLGLQCGSRSKSDFYYTLN
GSSIDHPAQSKSKSTWYIDEASCSCLLGEDPAKSLTDTPPDFNQASPPSRAPPSTSLTSD
QKFHSLPFSLSRKSGPNGSMSQGPLSLSVQSVRADQPDQQQQQQQQQQQAQQPTPTATAS
SPRQPSPPRGQPRLEVGSLVEVKENPPLCGVIRWVGLPPGLEEHLAGLELEEECVGCTDG
TFKGTRYFTCPPKKALFVKLKCCRPDSRFPSLHHSSNPIERCNSIAFGGYLSEVVHENTP
PRTENDGLEVMAGKKKGIQGHYNSCYLDSTLFCLFSFSSVLDTVLLRPRAKTDVEYYKET
QELLRTEIVNPLRIHGYVCATKIMKLRRILEKVEAASGFTSEEKDPEEFLNILFHHILRV
DPLLKLRSAGQKVQDCYFYQIFMDKKDKVLVPTSQQLIEWSFINSDLKFAEAPSCLIIQM
PRFGKDFKMFNKIFPSLELDITDLLEDTPRECRICGGLALYECRDCYEDGDITAGKIKQF
CEKCNTQVHLHPRRKSHRHGKLSVPKELQEGVWRQGSFPHQRMELFAVLCIETSHYVAFV
KYGAADSAWLFFDSMADRDGGQNGFNIPQVSPCPEVGAYLKMTPEELHALDPKNIQGYAR
RLLCDAYMCMYQSPTMSLYK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagttcggccctgtggagccaggagaagcctgggggcgggagcggcgggggctgcttc
cgggaggactggcgcttctacatggtggtgacggagtgtgtggtggagaagccgccccag
aagaccctgcgcatcccccgcggcagcctgggccaggcatgccaggagcgcaacagcctg
ggccgcacgctgccgccggccaagggcaagcggagcctgcggctgctggaccaggccaac
gtggtgctgagcctggacgagcgtgacgtggtggagctggacgagaagctggccgagctg
ctcttccccatcaccaactgcgaggaacgctacagcctgctgtgcaacgagccacggctg
gagcgcgcccgacagatcgactgcggctccaaggtgcgtgtgcagctgcgctccggcgac
gaccccctgcctggcgtggtacgcttcaagggctcgctgctcccggaccgggccctctcc
ggcatctggttcggcgttgagttactggaggagggccgaggccagggcttcacggaaggc
tcgtaccagggccagcagctgttccgctgcgaggacgagtgcggcgtgtttgtggccgtg
gacaagctggaactgtgggaggacgaggacgacgagctgggcgagctggaagtggactcc
gtcacgctagtcgacagcgagcacgactttcccccactggagatcaactcgcgcgtggtg
gtccagacccgcgaggggcctgaacgaggcaccatcatcttctacgacctgctgcctggc
aacgagagcctgggctactatgtaggagtggacatggacaatcctatcggggactgggac
ggcgtttttgacgggaagctgctgtgtagcttcgccagcctcgagcacacccgcctcgtg
cccgtctgtgacgtgatgccagagtactccatgcaggaccagaggccgcccaagcacagc
tttgcctccagaggcagcagcagtgacaagtcctcttctggccagagcaaaccaaagagc
aaaggattaggtcttcagtgtgggagtagaagcaagtctgacttttattacactttaaat
ggcagttctattgatcacccagcccagtccaaatccaaaagcacatggtacattgatgaa
gcgtcatgcagctgtctgctcggagaggatcctgccaagtccctcaccgacacgccccct
gacttcaatcaggcgtctccgccctcccgcgccccgccctccacctcgctgaccagcgac
cagaaattccactcgctgcctttcagcctgagccgcaagagcggccccaacggcagcatg
agccagggcccgttgtcactgtctgtgcagtcggtccgcgccgaccagccggaccagcag
cagcagcagcagcagcagcagcagcaggcccagcagcccacacccacggccaccgcctcc
tcccctaggcagccctccccaccgcggggccagccgcgcctggaggtgggctctctggtg
gaggtgaaggagaacccgccgctctgcggggtcatccgctgggtagggctgcccccgggc
ctggaggagcacctggcggggctggagctggaggaggaatgtgtgggctgcacagatggc
acgttcaagggcacgcgctacttcacctgcccgcccaagaaggccctgttcgtcaagctc
aagtgctgccggcccgactcgcgcttcccctcgctgcatcactcctccaaccccatcgag
cgctgcaactccatcgcctttgggggttacctgagcgaagtggtgcatgagaacacccct
ccacgtacagagaatgacgggctggaggtgatggcgggcaagaaaaaaggcatccaaggc
cactacaactcctgctacctggactctaccctcttctgtctgttttcgttcagctctgtt
ttggatacggtactgctgaggccacgggccaaaactgatgtggagtattacaaggagaca
caggagctgctgcgcaccgagatagtcaaccccctgcgcatacacggctatgtgtgtgca
actaaaatcatgaagctaagaagaattctggagaaggtggaggcggcatctggcttcacc
tctgaagagaaagatccagaggaattcctgaacatcctgttccatcacatcctgagagtg
gaccctctgctgaaactgcggtcggcagggcagaaggtccaggactgctacttctaccag
atcttcatggataagaaggataaagtgctggtgcccaccagccagcagctcatagagtgg
tccttcataaacagtgatctcaaattcgctgaggctccttcctgccttataatccagatg
cctcgctttgggaaggacttcaaaatgttcaacaagatcttcccttctctggagctcgat
atcaccgacttacttgaagacactcctagggagtgccgcatctgtgggggtctggcccta
tacgagtgcagagactgttacgaggatggtgacatcacagctgggaaaatcaagcagttc
tgtgaaaagtgcaatacccaggtccacctccacccacggcggaagtcccaccggcacggg
aagctgtccgtgcccaaggagctgcaggagggcgtgtggcggcagggcagcttcccccac
cagaggatggagctgttcgccgtgctctgcatcgagaccagtcactacgtggcgttcgtc
aagtatggtgccgccgactccgcctggctcttcttcgacagcatggccgaccgggatggg
ggccagaacggtttcaacatcccgcaggtgtccccgtgtccagaggtgggggcgtacctg
aagatgacccctgaggaactccacgccctggatcccaagaacatccagggctacgcccgc
cgtctgctgtgcgacgcttacatgtgcatgtaccagagtcccaccatgagcctgtacaaa
tga
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