Clupea harengus (Atlantic herring): 105899911
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Entry
105899911 CDS
T09045
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04137
Mitophagy - animal
char04144
Endocytosis
char04340
Hedgehog signaling pathway
char04350
TGF-beta signaling pathway
char04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105899911 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
105899911 (smurf1)
04350 TGF-beta signaling pathway
105899911 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105899911 (smurf1)
04137 Mitophagy - animal
105899911 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
105899911 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105899911 (smurf1)
04121 Ubiquitin system [BR:
char04121
]
105899911 (smurf1)
03029 Mitochondrial biogenesis [BR:
char03029
]
105899911 (smurf1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
105899911 (smurf1)
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
105899911 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
105899911 (smurf1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
HECT type E3
105899911 (smurf1)
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
105899911 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
105899911
NCBI-ProteinID:
XP_031422125
Ensembl:
ENSCHAG00000026207
UniProt:
A0A6P8FEK4
LinkDB
All DBs
Position
1:complement(8021859..8031086)
Genome browser
AA seq
417 aa
AA seq
DB search
MFFSFLAVLCAKNLAKKDFFRSCVSVTGLPDPFAKVVVDGSGQCHSTDTVKSTLDPKWNQ
HYDLYIGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPS
DSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENEGTVFDDSGPGRPLSCFMEEPLPYTD
PTGAAGGGNCRALESPNQEQRLQAQRVRNQDSRGHAHTPQNRPHGNQTPELPEGYEQRTT
VQGQVYFLHTQTGVSTWHDPRIPRDLNSVSCEDLGPLPPGWEVRSTVSGRIYFVDHNNRT
TQFTDPRLHHIMSQQSQVKESTQALPVQMEVPVEEGGEGGEMPARYERDLVQKLKLLRHE
LALQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctcttttcttgcagtattatgtgccaagaatctagcaaagaaagacttcttc
cgctcatgtgtttctgtcacagggttacctgaccctttcgccaaagtcgttgttgatggc
tcaggccagtgccactcgacagacacagtgaagagcacactggaccccaagtggaaccag
cattatgacctgtacattggcaagacagactccatcaccatcagcgtgtggaaccataag
aagatccacaagaaacagggcgccggcttcctgggctgcgtgaggctgctgtccaacgcc
atcagccgactcaaagacactggctaccagcgtttggacctatgcaaactcaacccctca
gacagcgatgcagtacgtgggcaaatagtagtgagcttgcagaccagagaccggatcggc
agtggggggccagtggtggactgcagaggcctgttagaaaatgaaggcacggtctttgac
gactcggggccggggcggcctctcagctgcttcatggaggagccgctgccgtacacagac
cccaccggagccgccggcgggggcaactgccgtgccctggagtcgcccaaccaggagcag
aggctccaagcacaacgcgtccgcaaccaggactcccggggccacgcacacactccccag
aaccgaccacacggcaaccagacgcccgaacttccagagggttatgagcagaggaccaca
gtgcagggccaggtctacttcctgcacacacagaccggcgtcagcacctggcacgacccc
aggataccacgggacctgaacagtgtgagttgtgaggacctcggccccctgccgccgggc
tgggaggtcaggagcacggtgtcaggaaggatttattttgtggaccacaataaccgaacg
acacagttcaccgaccccaggttacaccacatcatgagccaacagtctcaggtgaaggag
tcgacgcaggcgcttccggtgcagatggaggtaccggtggaggagggcggcgagggtggt
gagatgccggcgcgctacgagagggacctggtgcagaagctcaagctgctgcgccacgag
ctcgccctgcagcagccgcaggccggccactgccgcatcgaggtgtcccgcgaggagatc
ttcgaggagtcatacagacagatcatgaagatgaggcccaaagacctgaagaaacggctg
atggtgaagtttcgtggagaggaaggcctggactacgggggagtggcgaggtaa
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