Clupea harengus (Atlantic herring): 105902226
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Entry
105902226 CDS
T09045
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00310
Lysine degradation
char01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
105902226 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105902226 (prdm2a)
03036 Chromosome and associated proteins [BR:
char03036
]
105902226 (prdm2a)
Enzymes [BR:
char01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
105902226 (prdm2a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
105902226 (prdm2a)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
105902226 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2HE
zf-C2H2_6
DUF6033
Zap1_zf1
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
105902226
NCBI-ProteinID:
XP_012685228
UniProt:
A0A6P3W122
LinkDB
All DBs
Position
4:complement(24771807..24784384)
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AA seq
1549 aa
AA seq
DB search
MWNSEEVVVVKAEQLGPSSAQSLLQVVVPQEASVRETQAYMLPQAHDEEEEEEEERTIAE
ETPAPPGETVSMETGGYADPNTDGQAEMATAVSEGSGSVPEESEALVEDELDPDYDPEGD
PFQCHYCQRRFTTRQGLERHTHIHASAAASTHTLKCRFCTKTFGTQFGRRRHERRHESER
KRLGRSAAASAPTRPVNAPAASELSVTAPSAGAAPLKIPAPMRKMAPGAVDAHARGSAEG
GEQRGAHVCRHCRKAFGTHTNLRRHQRRVHERHLLPRRLANSTAPPVEGQKTVPTQQTRT
SSSSSPVASPTRDGAVEEEVEPEEYMVDISSNISKNLSFYIDGKIVSTSAVSNCEVIEVN
SGSAAVIGLDTLIISPSQIIQALKMQSAVSASCGIPSQSASRRRTATPPLLPQIKTELES
EPILTTTSSSSSPASFLPSSSAMGTVVGTVLSQPADPGGPQKEKTVYLSPKLKQLLQTQG
GCKPTFALITDGNRLASPLSLTVLSSSSSRFKRRTGSPPSAGSPPTSTQQSPAGTPESGA
TECSQEQITEAQCSSPPLSLCCKGDLEQSTPAGPASILVPVHQSPPLDWSEPRTGGSPCN
QQPLDLSSATVSRREGSEELSEAALDLSMPSRSECEGEGFGAMSPALLQLRKAKPSSSML
QQVLMSDYAGLAAPGDQGTSVAALVTDVAIVTAASVVPADPERLVVELALPPTSSLQSSP
PSLTPVATQTFTPPPAAGDPTPPPPVLPSASSPVVMVTSGPAQLLPVSSTTQPRLTLLPP
EASISRVETAADDPQPAGGAQVKALLPNWGDSVPICLVGAETLQSLPSAGGPPLGEMSLS
GTTTDFVTPIPALQAFAASVNESTIQSYSIIPNAVVIECTVSLESSQAFVPTFPGSTIES
PYGKIILGPSEHLQPYTTPQLPAPKDTVPPSEQAPKPPPPPLADLALPAAPPLEGTPLSA
PSPIKDESESTNEPVELTTAPSAAQEAPSQAEEKAVKEESVQVSPLSNSFVCNVCSEPFA
SMKELGRHIGEHSEAWPYKCEFCVQLFESAKLFLDHRSTYHGIGKIYVCSTCSKDFAFLS
NLQQHQKDLHPGQTCTHTEVEDGRLRPQNYNSPNKESAAGTPGATPDSGPQENERVTRRR
AAKKEEEKEEEPKQEQEEEFDTATEELYTTIKVMASGMGRTKGPDVRLGINQHYPSFKPP
PFPYHNRTPTGSVTSATNFTTHNIPQTFSTAIRCTKCGNSFDNMPELHKHILACANASDK
RRYTPKKNPIPLKQFARTQNGVLSPTTAANIRQNVSRKVGLGKRPNVSQESLAKLKLSAL
SKRKAQLVQKAVSQRNKSASLLKRSAGGEEEQGTHVCPHCRREFTYRASLSKHIALSCPN
KPVSKKARKRKEGAGMSLAQENNANVRRRSLDAAAKQQGALQPVGVGEHAGLPHLSKGDM
KRSAILVTAPAHPIKRSKNGPTDVLSPISQSNSSQRSGRLPQNGAEPRTQNLQTQPASQP
IPIRARERKGGPVTRSLQQARSMVPPSGQAEAGAAPQPAEPQVALAGRK
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgtggaactctgaggaggttgtagtggtaaaggcagagcagctgggcccgtcgtcggct
cagtccctgctgcaggtggtcgtgcctcaggaggcctctgtgagggagacccaggcctac
atgctgcctcaggcccacgatgaagaggaggaggaggaggaagagagaaccatcgctgag
gagacgccagcgccaccaggagaaacggtgtccatggagacaggcggatatgccgaccca
aacacagacggtcaagcagagatggcgacggcagtgtcggaaggttccggaagcgtcccg
gaggagtcagaggccctcgtggaggatgagctggaccctgactacgaccccgagggcgac
cccttccagtgccactactgccagcgccgcttcaccacccgccagggcctggagcgacac
acacacatccacgcctccgccgccgccagcacacacaccctcaagtgcaggttctgcacc
aagaccttcggcacccagttcggtcggcgccggcacgagaggaggcacgagagcgagagg
aagaggctgggcaggtccgctgccgcttcggcaccgacccgtcctgtgaacgccccagca
gcgtcagaactgtctgtgaccgccccctctgccggtgccgcccctctgaagatccctgcg
ccgatgcgtaagatggctccgggggccgtggacgcacacgcccgtggctcggcggagggc
ggtgagcagaggggcgctcacgtctgcagacactgccgcaaggcgttcgggacacacacc
aacctgcggcggcaccagcgcagggtccacgagcggcacctgctgccccgccgcctcgcc
aactcaacagcacccccggtggaggggcagaaaactgtgcccacacagcagactcgcacc
tcctcctcctcctccccggtggcgagcccgacccgagacggagcggtggaggaggaggtg
gagcctgaggagtacatggtggacatctcaagcaacatctccaagaacctcagcttctac
atcgacggcaagatcgtctccaccagcgccgtcagcaactgcgaggtcatcgaggtcaac
tctggctcggcggctgtgattggtctagacaccctgatcatcagcccttcccagatcatt
caggcgctcaaaatgcagtcggccgtgtccgcttcgtgcggcatccccagccaatcagca
tccagacgtcggacggccacaccgccactgctgccgcagattaaaacggaactggagtcg
gaacccatcctcaccaccacctcctcttcctcgtctcccgcctccttcctcccgtcctcc
tccgcgatgggcacggtggtgggcacagtcctgtcccagcctgcggacccaggcggcccc
cagaaggagaagaccgtgtatctgtccccaaagctaaagcaactgctacagacgcagggc
ggctgcaagcccaccttcgccctcatcaccgacggcaacagactcgcctcgccgctgtcc
ctcaccgtcctgtcctcgagttccagccgcttcaagagacgcacggggtccccccccagc
gctgggtcgccccccacctccacacagcagagccctgctgggacaccggagagcggggca
acagaatgttcccaggagcagataacggaggcccagtgcagttctccgccgttgagtctt
tgctgcaagggcgacctggagcaatcgactcctgcaggaccagcatcgatcctggtcccg
gtacatcagagcccgcctctggactggtctgagcccaggaccggcgggagcccatgcaac
cagcagccgttggacctgtccagcgccaccgtgagccggagggagggcagcgaggagctg
agcgaggcagctctggatctgagcatgcccagtaggagtgagtgcgagggcgagggcttt
ggcgcgatgtctcccgctcttctgcagctgcggaaggccaagcccagctccagcatgctg
cagcaggtcctgatgagcgactatgccggcctcgcagcacccggagaccagggcacaagc
gttgccgccctggtgacggatgttgccatagtaactgctgccagcgtggtgcctgcggac
cccgagaggttggtggtggagctggcgctgccccccacctcctccctgcagtcctctcca
ccctccctcacccccgtcgccacacaaacattcacccccccacctgctgccggcgacccc
acccctcctcccccggtcctgccctccgcttcctcgccagttgtcatggttacgtcaggg
cctgctcagctgctgcctgtgagctccaccacccagcccagactcacgctgctgcctcct
gaagcatccatcagcagagtggagacggcagcagatgacccccagccagcagggggagcc
caagtgaaagcattgcttccaaactggggggactctgtccccatatgcttggtgggcgct
gaaacacttcagagtctaccttccgctgggggcccccccttgggcgagatgtccctctca
ggcacgactacagactttgtcactccaatcccagcgctgcaggcctttgcggcatctgtg
aacgagtcgaccattcagtcctacagcatcatccccaacgctgtagtgattgagtgtacg
gtgtctctagagtcctcgcaggctttcgttcccaccttccccgggagcaccatagagtct
ccctatggcaaaatcatccttgggccttcagagcatctgcagccttacaccacacctcag
ctcccagcccctaaagacacagtgcccccttctgagcaggccccaaaacccccccctcct
ccactagccgacctcgccttgcctgctgcccccccactggagggaacccccctctcagct
ccttcccccatcaaagacgagtccgagagcacgaacgagccagtggagttaaccacagcg
ccctcagctgctcaggaggccccatcacaagcggaggagaaagctgtgaaggaagagtcg
gtgcaggtgagtcccctgagcaacagcttcgtgtgtaacgtctgctccgagcccttcgcc
tcgatgaaggagctgggccgccacatcggcgagcactccgaggcctggccctacaagtgt
gagttctgcgtccagctgttcgagagcgccaagctgttcctggaccaccgctccacgtac
cacggcattggcaagatctatgtctgctccacgtgctccaaggactttgccttcctgagc
aacctgcagcagcaccagaaggatctccacccgggccagacctgcactcacacagaggtg
gaggacggcaggctgcggccgcagaactacaacagccccaacaaagaaagcgcagcggga
acaccgggcgctactcctgactccggcccgcaggagaatgagagggtgacacgcaggagg
gcggccaagaaagaggaggagaaggaggaggagccaaagcaggagcaggaggaggagttt
gacacggccaccgaggagctctacactacgataaaggtcatggcatcagggatgggccgc
accaaaggtcccgatgtgcgtttagggatcaaccagcactaccccagctttaagcctcca
cccttcccttaccacaaccgcaccccgaccggctcggtcacctcagcaaccaacttcacc
acccacaacatcccgcagactttcagcacggccatccgctgcaccaagtgcggtaacagc
ttcgacaacatgcccgagctgcacaagcacatcctggcctgtgccaacgccagcgacaag
cgccgctatacccccaagaagaaccccatcccgctgaaacagtttgcgcggacgcagaac
ggcgtgctctccccaaccacagccgctaacatccgccagaacgtctcccgcaaagtcggg
ctagggaagaggcccaacgtgagtcaggagtccctggcgaagttgaagctgagcgccctg
agcaagaggaaggcccagctggtgcagaaggcggtttcccagaggaacaagtccgccagc
ctgcttaagagaagcgcggggggggaggaggagcagggcacgcacgtgtgcccccactgc
cgacgggagttcacctaccgcgccagcctcagcaagcacatcgcgctcagctgccccaac
aagcccgtttccaagaaggcccggaagaggaaggagggagcaggaatgtcccttgctcag
gagaacaacgccaacgtgcggcgacgcagcctagacgctgcggccaaacagcagggggcg
ctgcagcctgtcggtgtgggagaacatgccggactgcctcacctcagcaagggggacatg
aagaggtcggccatcttggtgacggcgccggcccaccccatcaagaggagcaaaaatggg
cctacagatgtcctgtcgccaatctcgcagtccaattcctcacagcgatcgggccggctg
ccgcagaatggggcggaacccagaacccagaaccttcagacccaacctgcatcgcagcca
atccccatcagggcgcgggagaggaaggggggcccggtcacacggagccttcagcaggcg
cgctctatggtgcccccctctggtcaggccgaggctggagctgcaccccagcccgcagag
cctcaggtggcgctggcagggaggaagtga
DBGET
integrated database retrieval system
