Clupea harengus (Atlantic herring): 105905952
Help
Entry
105905952 CDS
T09045
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105905952 (upf3a)
03015 mRNA surveillance pathway
105905952 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105905952 (upf3a)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105905952 (upf3a)
mRNA cycle factors
P-body specific factors
105905952 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
105905952
NCBI-ProteinID:
XP_031442643
Ensembl:
ENSCHAG00000020346
UniProt:
A0A6P8GVU7
LinkDB
All DBs
Position
2:22128575..22134768
Genome browser
AA seq
484 aa
AA seq
DB search
MKSEKEQMTESRERSIVEIQFRDIQRDQENVTASPKVKEEKKEVFTKVVIRRLPPSLSKD
QLEEQLSPLPSYDYFEFFPADHSLYPHLFSRAYINFKNLEDIVNFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLETYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDREEDLDSDRLKEKGDSGEIDRSKWEKPATHVKPK
EHKEKWCRGQAESDKEQREGHGRRQRDREHRARDDERKRQRHHDFDKFTRRKDETKWGKG
YCQERAKKDGHGHHAYAYCPDTADKLGNQDRDDMGSRKERIRNKSVLALQEKRTSQSEGL
DQIRGALPEKDRPAMQLYQPGARNRKRLGSTGKAFDCPAQSPEHCGDHCYDVTLGTGSEK
SGDE
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgaaaaggagcaaatgacagagagcagggagagaagtatcgtagaaatacag
ttcagagatatccagcgggaccaggagaacgttactgcaagtccaaaagtcaaggaagaa
aaaaaagaagtatttacgaaggttgtcatacgccgattgccaccaagtctgtccaaagac
cagttggaggaacaacttagtccgttgccgtcatatgactattttgaattctttccggct
gatcatagcctttatccacatcttttctccagagcgtacataaacttcaaaaaccttgag
gacatagttaacttcagggaccgtttcgacggttatgttttcatagacaacaaaggccag
gaatatccagcagtggtagaatttgcaccttttcaaaaaatatccaaaaagaagctgaag
aagaaggatgccaaagctggtagcattgaagaagacccagagtacaagcgatttttggag
acctactcttgtgatgaggagaaatctatggccaatccagaaacattgctgggagaaatc
gaggcaaagaccagagaactcatagctaaaagaacgacacctctgttggagtacatcaaa
aataagaaactggaaaagcagagaatcagggaggagaagcgagaggagaggaggcgcaga
gagctggagaagaagcgacagagggaggaggaaaagaggaaacgcagggaggaggagagg
cgaaaacgcaaggaggctgagaagcaaaagaaactctctgagaaggaaataaagatcaag
cttctgaagaagtgtgaccgagaggaagatctggactcagacagacttaaggagaaagga
gacagtggagagatagacaggagtaaatgggaaaagccagccactcatgtgaaacccaaa
gagcacaaggaaaaatggtgcagaggtcaggcagagagcgataaggaacagcgcgagggt
cacgggcggcgccagcgggacagagagcaccgggcccgggacgatgagcgcaagcgtcaa
cgccaccacgactttgacaagttcacgcgccgcaaggacgagacgaagtggggaaagggc
tactgccaggagcgggccaagaaagatggccacgggcaccacgcgtacgcctactgcccc
gacaccgcagacaaactgggcaaccaggacagggatgacatgggtagccggaaggaacgg
atccggaacaagtctgtgttagcgcttcaggagaaaaggacctcccagtctgaggggctg
gaccagataagaggggctctgccagagaaggaccgcccggccatgcagctctatcagcct
ggcgctcggaaccgcaagcgcctgggctccactggcaaggccttcgactgccccgcccag
tcgcccgagcactgcggcgaccactgctacgacgtcaccctgggcacaggctccgaaaag
agcggagatgagtag
DBGET
integrated database retrieval system
