Clupea harengus (Atlantic herring): 105906180
Help
Entry
105906180 CDS
T09045
Symbol
pitx2
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105906180 (pitx2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105906180 (pitx2)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
105906180 (pitx2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
Auxin_canalis
Motif
Other DBs
NCBI-GeneID:
105906180
NCBI-ProteinID:
XP_012689746
Ensembl:
ENSCHAG00000000703
UniProt:
A0A6P3W6F4
LinkDB
All DBs
Position
6:8559448..8570863
Genome browser
AA seq
317 aa
AA seq
DB search
MNSMKDPLTLEHLHHHHIPGNKLASLHHTPLAMASTLQPLQRSVDTKHRLEVHTVSDSSS
PESVEKEKGQSKNDDSSDDPKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV
WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYTYNNWA
AKGLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMSMSSSMVPSGVTGVPGSSLN
SLNNLNNLSNPSLNSGVPTPTCPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQ
NPGSNLSACQYAVDRPV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgaaggatccgctgactttggagcacctacaccatcaccatatcccaggg
aataaactcgcttccctacaccacacgccacttgcgatggcttcaactctacaaccgttg
cagcggtctgtggacaccaagcaccggctagaggtgcacaccgtgtcggacagttctagt
ccagaatctgtagaaaaagaaaagggtcagagtaaaaatgacgattcctccgacgacccg
aagaagaagcggcagcgacgacagcgcacgcacttcaccagccagcagctgcaggagctc
gaggccaccttccagcggaatcgctacccggacatgtccacacgggaggagatagctgtc
tggactaatcttacggaggccagagtgcgggtgtggttcaagaatcgcagagcgaagtgg
aggaaacgggagaggaatcaacaggctgagctttgcaagaacggcttcggccctcagttc
aacggactcatgcagccctacgacgacatgtacccaggctacacgtacaacaattgggct
gctaagggcctaacgtccgcttccctgtccaccaaaagcttccctttcttcaattccatg
aatgtcaatcccctctcctcgcagaccatgttctccccaccaaactccatctcctccatg
agtatgtcatccagcatggtcccttccggggtgactggcgtgccgggatccagtctcaac
agcctcaacaacttgaacaaccttagcaatccctccctgaattcgggcgtccccacgccg
acgtgtccttacgctccgccgacgcctccctacgtgtatcgggacacttgcaactccagc
ctggccagcctgagactgaaggcaaagcagcattcgagttttggatatgccagcgttcaa
aatccgggctccaatctcagtgcctgccagtacgctgtggatagaccagtctaa
DBGET
integrated database retrieval system
