Clupea harengus (Atlantic herring): 105907049
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Entry
105907049 CDS
T09045
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105907049 (upf1)
03015 mRNA surveillance pathway
105907049 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105907049 (upf1)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105907049 (upf1)
5.6.2.5 RNA 5'-3' helicase
105907049 (upf1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105907049 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105907049 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
105907049
NCBI-ProteinID:
XP_031416267
Ensembl:
ENSCHAG00000011953
UniProt:
A0A6P8EZG6
LinkDB
All DBs
Position
22:17599810..17616691
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGDDSVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDSIHYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMTTAMYDAREAMIPGSVYDRSNAGRPSNMYFQTHDQIGMIGTGPNPIAA
MNIPIPFNLVMPPMPPSGYLGQVNGPAAGRGAPKGKTGGRGGRQRSRGMGNHGGGQATMS
GSQASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaggcgtatgggccgagctcgcagactctaaccttcctggacaccgaggaa
gcggagttgcttggagcagatacccagggttcggagtttgagttcaccgatttcaccctg
ccaagccagactcagacacaagggcagactcagagccagttggacaatcaggtaaatggt
cctgatggcgttttgcaaaatggtgacgactctgtcgtgaaaacaagtcaacttcttgcc
gaacttaattttgaagaggatgaagaggacacatactacacgaaagacctcccggtgcat
gcatgcagctactgtggcatccatgacccagcctgcgtggtgtactgtaacacaagtaag
aagtggttctgcaatggacgtggtaacacctccggcagtcatattgtgaaccatctggtg
agagctaagtgtaaggaagtcactctgcacaaggatgggcccctgggtgagactgtgctg
gagtgttacaattgtggatgccgcaacgtcttccttctcggcttcatcccagccaaggca
gactctgtggtggtactgctgtgcaggcagccctgtgcaagccagagcagccttaaggac
atcaactgggacagctcccagtggcagccgctcatccaggaccgctgcttcctgtcctgg
ctagtgaagatcccctccgagcaggagcagctcagggcgcgtcagatcaccgcccagcag
attaataaattggaggagctctggaaggaaaaccccacagccacgctggaggaccttgag
aagcccggggtggacgaggagccgcagcacgtgctcctgcgctacgaggacgcctaccag
taccagaacatctttgggccgctggtcaaactggaggccgactatgacaagaagctgaaa
gagtcccagacccaggataatataacagtcaggtgggacttggggctgaataaaaagagg
attgcttatttctcccttcccaagacggactcaggtgacatgcgactgatgcagggtgat
gagatttgcctgcgctacaaaggagacctggctccgctgtggaagggaatcggacacgtc
atcaaggtcccagacagtatccattatggagatgagattgccattgagctgaggagcagt
gctggagcacctgtggaaattccacacaacttccaggttgattttgtctggaagtccacc
tcctttgacaggatgcagagtgccctgaagacctttgctgtggacgagacatccgtgtcg
ggctacatctaccacaagctgctaggccacgaggtggaggacgtcatcatcaagtgccag
ctgcccaagcgcttcactgcccagggtctgcctgacctcaaccactctcaggtctatgct
gtgaagacggttctgcagcgccctctcagccttatccagggcccgcccggcaccggcaaa
actgtcacctcagcaaccatcgtgtaccatctggccagacagggcaacgggcctgtgctg
gtgtgtgcacccagtaacattgcggtggaccagctgacggagaagatccacatgtcgggg
ctaaaggtggtgcgtctgtgtgccaagagcagggaggccatcgactcgcccgtctccttc
ctggctctgcacaaccagatccgcaacatggacagcatgcctgagcttcagaagttgcag
cagctgaaggatgagactggagagttgtcttcctccgacgagaagcgctaccgggccctg
aaacgcaccgctgagagggagctcctcatgaatgcagatgtgatctgctgcacgtgtgtg
ggagcaggggacccgcggctggctaagatgcagttccgctccatcctcatcgacgagagc
acccaggccacggagcccgagtgcatggtgcccgtagtgctgggggccaaacagctgatc
ctggtgggagaccactgtcagctaggtccggtggtgatgtgtaagaaggcggcgaaggcg
ggcctgtcccagtctctgtttgagcggctggtggttctgggcatccgtcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagtgccttcccctccaacatcttctacgag
ggctcactgcagaacggagtcaccgctgcggaccgcatgaagaagggctttgacttccag
tggccacagccggataagcccatgtttttctacgtgacgcagggccaggaggagatcgcc
agctcaggaacctcctatttgaacaggacggaggcgtcgaatgtggagaagatcaccacc
agactgctaaaggcaggtgccaagcctgaccagattggcatcatcaccccttacgaaggc
cagcgctcatacctggtgcagtacatgcagttcagtggctctctccacaccaaactctac
caggaagtggagattgccagtgttgacgccttccagggcagagagaaggacttcatcatc
ctgtcctgtgtgcgagccaacgagcaccagggcatcggtttcctcaacgacccgcgccga
ctcaatgtggccctcaccagggccaggtacggcgtgatcatcgtggggaacccgaaggcc
ctgtccaagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggtgctg
gtggaggggcccttgaacaacctcagagagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccccggcgcccgtttcatgaccacagccatgtatgacgccaga
gaggctatgatcccaggctctgtgtacgacaggagcaacgctggacgcccgtcaaacatg
tacttccagacccatgaccagattggcatgattggcacagggccaaaccccatagctgcc
atgaacatccccatccccttcaacctggtcatgccccccatgcctccctccggatacctg
ggacaggtcaacggaccagcggcaggccgcggggctccgaaggggaaaacgggtgggcgt
ggcgggcgccagcgcagccgtgggatgggtaaccacggcggcggtcaggccaccatgtca
ggcagccaggcgagccaggacttggtgtcccagccgttctcccagggccccctgacgcag
ggctacatcaccatgagccagccctcgcagatgagtcagccaggcctgtcccagcctgag
ctctcacaggatagttacctaggtgacgagtttaagtctcagatcgacgtggctttgtcc
caggactccacctaccaaggtgaaagggcataccaacatggcggagtgactggtctgtcg
cagtactag
DBGET
integrated database retrieval system
