Clupea harengus (Atlantic herring): 105909903
Help
Entry
105909903 CDS
T09045
Symbol
trim62.1
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM62
KO
K12030
tripartite motif-containing protein 62 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105909903 (trim62.1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105909903 (trim62.1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105909903 (trim62.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-B_box
zf-C3HC4_3
zf-RING_2
zf-RING_10
zf-RING_6
KxDL
zf-RING_5
Phasin
U-box
Fib_alpha
DUF4795
CorA
AAA_13
Nipped-B_C
SHE3
Vps39_1
GCP_C_terminal
DUF5955
TBCA
Motif
Other DBs
NCBI-GeneID:
105909903
NCBI-ProteinID:
XP_012694029
Ensembl:
ENSCHAG00000006807
UniProt:
A0A6P3WAU7
LinkDB
All DBs
Position
5:complement(10240695..10301813)
Genome browser
AA seq
475 aa
AA seq
DB search
MACCLKDELLCSICLSIYQDPVSFGCEHYFCRKCITEHWSRQEHHVARDCPECRRTFADP
LLSPSLKLSNIVERYSAFPLDAILNAQRSTYPCKDHEKVKLFCLTDKNLVCFFCDEPALH
EQHQVTTIDEAYEELQREMKEQLATLQDSEKGHTEALQLLQRQLTETKSSAKSLRATIGE
AFERLHRFLRERQKSMLEELEMDTARTLCDIEHKIQRYSQQLRDVKEGIQILQERLGESA
RHDFLEGVAHTSERIKGKIHETNLSYEDFPTSKYMGPLQYTIWKSLFQDISPVPAALTLD
PITAHQRLILSDDCTIVAYGNLHPQPLQDSPRRFDVEVSVLGSEAFGAGLHYWEVMVSEK
TQWMIGVANETVNRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVKSKLEKVGVYL
DYPKGLLVFYNADDMSWLYTYREKFPAKLYPYFSPGQSHANGKNVQPLRINTVRL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctgtctgaaagacgagctcctgtgttcaatctgcctgagtatctaccaagac
cccgtcagtttcggctgcgagcactacttctgtcgcaagtgcatcacggagcactggagc
aggcaggagcatcacgtcgccagagattgccccgagtgccggaggaccttcgccgacccg
ctgctctccccgagcctcaagctctccaacatcgtggagaggtactcggccttcccactg
gatgccatcctcaatgcgcagaggagcacctacccctgcaaggaccacgagaaggtcaag
ctcttctgcctcaccgataagaatctcgtgtgcttcttctgcgatgagcctgccttacac
gagcagcaccaggtgaccaccattgacgaggcgtacgaggagctacagagggagatgaag
gaacagctggcaacgctgcaggacagcgagaaagggcacacggaggcgctgcagctgctg
cagagacagctcacagagaccaagtcgtcggcgaagagcctgcgggcgaccatcggcgag
gcgttcgagcgcctgcaccggttcctgcgcgagcgtcaaaagagcatgctggaggagctg
gagatggacacggcgcgcacgctctgcgacatcgagcacaagatccagcgctacagccag
cagctgcgcgacgtcaaggagggcatccagatcctgcaggagcgccttggcgagagcgcc
cgccacgacttcctggaaggggtcgcccacacctcagagagaatcaaaggcaagatccac
gagaccaacctgagctatgaagacttccccacatccaaatacatgggaccactgcagtat
acaatctggaagtccttgttccaggatatatcaccagtccctgcggccctgacccttgac
cccatcacagcgcaccagcgcctcatcctgtcggacgactgcaccatcgtggcgtacggt
aacctgcacccacaaccgctgcaggactccccgcggcgcttcgacgtggaggtgtccgtg
ctgggctccgaggcgttcggcgccggcctgcactactgggaggtgatggtgtcggagaag
acccagtggatgatcggcgtggccaacgagacggtcaaccgcaagggcagcatccaaatc
cagcccagccgcggcttctactgcatcgtcatgcacgacggcaaccagtacagcgcctgc
accgagccctggacccgcctcaacgtcaagagcaagctggagaaggtgggcgtctacctg
gactaccccaagggcctgctggtcttctacaacgccgacgacatgtcctggctctacacc
taccgcgagaagttccccgccaagctctacccttacttcagtcctggccagagccatgcc
aacggcaagaacgtccagccgctccgcatcaacaccgtccgcctatag
DBGET
integrated database retrieval system
