Clupea harengus (Atlantic herring): 105912946
Help
Entry
105912946 CDS
T09045
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105912946 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105912946 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105912946 (usp13)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105912946 (usp13)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105912946 (usp13)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105912946 (usp13)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105912946 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
105912946
NCBI-ProteinID:
XP_031430069
Ensembl:
ENSCHAG00000025342
UniProt:
A0A6P8FTV3
LinkDB
All DBs
Position
10:17629261..17658597
Genome browser
AA seq
856 aa
AA seq
DB search
MATDLGELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCLNTFLGFGREHVER
HYRKTGQSVYMHLKRTVKEKATGAAGGTVPRRRNGKVFLDLELSRDFNGEEYECEDEAKL
VIFPDHYEIPLPNIEELPALVTIACDAVLNAASAYKKQEPVSWEEELQVSRHARSLRQQD
NGVRIPPSGWKCSKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALENYRETNFPLAVK
LDTITPDGADIYSFEEEEAVLDPQISDHLSHFGIDMLKMNKTENRHTDNLVQRRVSEWEV
IQEAGQKLKAVYGSGYTGIKNLGNSAYISTTMQVLFSVPEFQRAYVGSLQRIFDYSPLDP
SQDFGTQMAKLGHGLLSGLYAKPPMKSELIEQVMKEEYKKQQAGISPRMFKSLVSRDHPE
FSSNRQQDAQEFLLHLINLIERNSAGSENPSDVFRYLVEERVQCCQTRKVRYTQRVDYLV
QLPAPIEAASNREELIAYDAKRREAEETMGAPPEPVRARIPFTACLQALTEPQNVQDFWS
SALQAKSAGVKTCRFATFPEYLIVPIKKFTFGVDWVPKKLDVAIDVPDFLDLNRLRATGL
QSGEEELPDLTPPIVSPEDTRDNSMSNSTDSPEIDESSVMQLAEMGFPLEACRKAVYYTG
NMGAEMAFNWLIAHMEEPDFAEPLAVPSFLEPDPISEPVASALDNQPPEESISILTSMGF
PRQHTIRALRTTNNNLERALDWIFTHPESEEEPEEVSDLANAQHNDHGPPITNGNSDSTL
SPDTDASGPRVRDGPGRYELFAFISHMGESTMSGHYVCHIKKEGRWVIYNDQKVSLSERP
PKDLGYIYFYHRLSSC
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggctacagatctgggagaactcctggtcccgtacatgcccaccatcagagtgccaaga
acaggagacagagtgttcaagagtgaatgtgccttttcctacgattctcctgagtcggag
ggaggcctgtatgtgtgtctgaacacattcctgggctttggcagagaacacgtggagagg
cattaccgcaagactggacagagtgtttacatgcatctcaaacgcacggtcaaggagaag
gccacaggtgcagctggaggaaccgtgcccaggaggagaaacggaaaagtatttttagat
ttagagctcagccgtgattttaacggagaggaatatgaatgtgaagatgaggccaagctt
gtcatattcccagaccactacgaaatccccttacctaatatcgaggagctcccagctctg
gtgacaatagcgtgtgatgcggtgctgaacgcggcctcggcgtataagaagcaggagccg
gtctcctgggaggaggagcttcaggtgtccagacacgcacgcagcctccgacagcaggac
aacggggttcgcatcccccccagtggctggaagtgttctaagtgtgagatgcgggagaac
ctatggctgaacctcacagacggttccgtgctgtgtgggaagtggttcttcgacggcagc
ggagggaacggccatgctctggaaaactaccgggagaccaacttccccctggccgtcaaa
ctggacaccatcacaccagacggagcagatatttactcgtttgaggaggaggaggctgtg
ctggacccacaaatctcagaccacctgtcacactttgggatagacatgctcaagatgaac
aagacagagaacaggcacacagataaccttgtgcagcggcgagtcagtgagtgggaggtg
atccaggaggcggggcagaagctcaaggcagtgtacggttccggctacactggcatcaag
aacctggggaacagcgcttacatcagcaccaccatgcaggtcctcttcagtgtcccagag
ttccagagagcatacgtagggagtctgcagaggatctttgactactctcctctggatccc
tcacaggactttggcacacagatggctaaactaggtcacggtcttctctcaggactgtac
gcaaaaccaccaatgaaatctgagctcattgaacaggtgatgaaagaagaatacaagaag
cagcaggccggcatctctccgcggatgtttaagtcgctggtgagccgagaccaccctgag
ttctcctccaacagacagcaggacgcacaggagttcctcctgcacctcatcaacctcatt
gagaggaacagcgcgggctcagaaaacccgagcgatgtgtttcgttacctggttgaggag
cgagtgcagtgttgtcagacgcgaaaggttcgctacacacagcgcgtcgactacctcgtt
caactccccgcccccatcgaggccgcatccaatcgagaggagctgatagcatatgatgcc
aagcgtagggaggcagaggagaccatgggtgcaccccctgagccggtccgggcgcggatc
cccttcaccgcctgcctgcaggccttgaccgagccgcagaacgttcaggacttctggagc
tccgccctacaggccaaatcagcaggagtgaagacgtgccgcttcgccacgttcccagag
tacctcatcgttccgatcaagaagttcacctttggagtcgactgggtcccaaagaagctc
gacgtcgccatagatgtgccagacttcctggatctgaaccgtctgcgtgcgacgggtctg
cagagtggagaggaggagcttcctgacctcacgccaccaatagtcagtcccgaagacacc
agagacaactccatgagcaactccacagactctccagagatagatgagtcttcggtgatg
cagctggcggagatgggctttcctctggaggcgtgtcgaaaggctgtctactacacggga
aatatgggcgcagagatggccttcaactggctcatagcacacatggaggagcccgatttt
gcggagccgctggcggtcccctcgttcttagagccggaccccatcagcgaacctgtggcg
tctgcactggacaaccagcctcccgaggagagcatctccatcctcacctccatggggttc
ccacggcaacacaccatcagagccctcaggaccacgaacaacaacctggaacgcgctctg
gactggatcttcacacaccccgagagcgaggaggagccagaggaggtgtctgacctggcc
aacgcccagcacaatgaccacggcccccccatcaccaacggcaacagtgactccaccctc
tcccccgacacagacgcatcaggcccacgagtcagagacggacctggccgatatgagctg
tttgcattcattagtcatatgggcgagtccaccatgtcgggtcactacgtgtgccacatc
aagaaggagggcaggtgggtgatctataatgaccagaaagtgagtctgtctgagcggcct
cctaaggacctgggctacatctacttctatcaccggctctccagttgctag
DBGET
integrated database retrieval system
