Clupea harengus (Atlantic herring): 116222337
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Entry
116222337 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like
KO
K12012
tripartite motif-containing protein 35
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
116222337
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116222337
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
U-box
Prok-RING_4
zf-RING_5
zf-RING_2
AAA_11
Mitovir_RNA_pol
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
116222337
NCBI-ProteinID:
XP_031431863
UniProt:
A0A6P8FV86
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All DBs
Position
11:1475785..1478715
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AA seq
471 aa
AA seq
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MACRHAFLPEEDLSCPVCCDIFRHPVLLPCSHSICQICLWQFWKQKGSRECPICRRVSAT
DQTPCNLALKNLCESFLQNRSQTASFSRLPEVHCIPHKEQFKLFCLDDEQPVCLVCQASR
KHSEHTFLPIDEAAQDYKGQLQTSLKLLQEKLRVHNQFKLTYHQTSSHIKIQAQDTERQI
RREFEELQQFLRDEQAARLTALKAEERQKSRVMREKIEKINKDIGTLSDTVRPTEKEMRT
EHALFLQNFKATMERAQYTLPDIPQQPDCVSGCLINVAEHLGNLKFRVWEKMKNKVQYTS
VILDPNSAHPRLILSRDLTSINFGDAKQLPDNAERFDYWECVVGSGGLDSGCHCWDVEVG
DSKGWDVGVTPESNQRKGISFSWERVWRVGFRETGMHYSGPHLHKLQQRLQRVRVHLNMA
TGQLAFWDPISDTHLHTFTHTFTESLFPFFYSNLSNAPQRILPGKISVFLE
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcagacatgcatttctgcccgaagaggatctgtcatgtcccgtttgctgtgac
atctttaggcatcctgttcttttgccatgtagtcacagcatctgtcaaatctgtctatgg
cagttttggaaacagaagggatctcgagaatgtccaatttgccgtcgagtgtccgcgacc
gaccagactccgtgtaacttagcattgaagaacttgtgtgaatcctttttacagaacaga
agtcagaccgctagcttttctagattgcctgaagtacactgcattccacataaggaacaa
ttcaagcttttttgtctggacgacgaacagcctgtttgtctggtgtgtcaggcttcgagg
aaacattcggagcatacatttcttcccatcgatgaagcggcgcaagattataaggggcag
ctccagacgtcactgaaactcttgcaggagaaacttcgagtgcacaatcagttcaaactg
acctaccaccaaacatccagtcacatcaagatccaggcccaggacacggagaggcagatc
aggagagagtttgaggagcttcagcagtttctgcgagacgaacaggcagcacggcttaca
gctctgaaggcagaggagaggcagaagagtcgtgtgatgagagagaagattgagaagatc
aacaaggacatcggcactctttcagacaccgtcagacctacggaaaaggagatgcgaact
gaacatgcactcttccttcagaacttcaaggctacaatggaaagagcccagtacacactg
ccagatataccacagcagccagactgcgtttcaggatgtctgatcaatgtggcagaacac
ctgggcaacctaaagttcagggtctgggagaagatgaagaacaaagttcagtatacctct
gtgatcctggacccaaacagtgcccacccacgcctcatcctgtccagagatctgaccagc
atcaacttcggtgacgctaagcagcttcctgacaacgcggaacgctttgactactgggaa
tgtgttgtgggctcagggggcttggactcaggatgccactgctgggatgttgaggtcggg
gacagcaaaggctgggatgtgggtgtgacccccgagtccaaccagaggaaggggatcagc
ttctcctgggagagagtgtggcgtgtgggcttcagggagacggggatgcactactcagga
cctcacctccacaagctccagcagagactgcagagggtcagagtgcacctgaacatggcc
acagggcagctggcattctgggaccccatcagtgacacacacttgcacaccttcacacac
accttcacagagagtctcttcccgttcttctacagcaacctctcaaacgctcctcaaagg
attctgccagggaagatctcagtgttcttagaataa
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