Clupea harengus (Atlantic herring): 116223819
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Entry
116223819 CDS
T09045
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
116223819
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116223819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-RING_6
zf-Nse
zf-RING_10
U-box
MAP65_ASE1
Fib_alpha
Exonuc_VII_L
Dermcidin
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
116223819
NCBI-ProteinID:
XP_042565833
UniProt:
A0A8M1KTQ3
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All DBs
Position
15:complement(28683238..28692408)
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AA seq
575 aa
AA seq
DB search
MAEAISSDNELFTCPICMDLLRDPVTTNCGHSYCKGCIKGCWDQEDQKGVYSCPQCRQTF
TPRPVLNKNNIFAELVEKIRKTRIQAAAPVSCPAGPGDVECDVCTGRKLKAVKSCLDCVL
SYCETHFKAHNDLNPGRKHSVIDATGQLQERICSHHKKVFEIFCRTDQSCICYLCTMDEH
KGHDTVSAAAEWTDKQRQLGQTQRRFQQRIQEREKELQELRKAVETLKSSAQTAVEDSER
IFTEMIRSIERRCSEVKELIRDQEKAEVSRAEDLLKRLEQEIAELKRRDAELEQLSHTED
HIHFLKVTEFEIKHPCGFRRGKIFSFEAVKESASGVKVQLDDIFRQEVVKISAAVTNIQI
IQSLEYADPELPVRRTSSKGLLPPEMSEVQAVFPEPVTREEFSQYSCHFTLDPNTANRHL
HLSEGNRRVERRDEVQSYPDHPERFDGWGQVLCREGVSGRCYWEVEWSRGLVYISVSYKS
ISRRGWGNECVFGCNDQSWSLALTSSSSYFIHNNKQTQLPLVASSRIGVYVDHRAGTLAF
YSISDTMTLLHRVQTTFTHTLYPGFGLYPGTVKLL
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcgatttcaagcgacaatgagctttttacatgtccgatttgtatggatctt
cttagggatccagtgactactaattgtggacacagttactgtaaaggctgcattaagggc
tgctgggatcaggaagatcagaagggagtctacagctgcccccagtgcagacagacgttc
actccaagacccgttttaaacaaaaataatatttttgctgaacttgtggaaaagatccgg
aagaccagaatccaagctgctgctcctgtttcatgtcctgctggacctggagatgtggag
tgtgacgtctgcactgggagaaaactcaaagctgtgaagtcctgtctggattgtgtgttg
tcttactgtgaaactcacttcaaagctcacaatgacctgaaccccggaagaaaacactca
gtgattgatgccacaggccagctacaggagaggatctgctctcatcataagaaggttttt
gaaatattttgtcgaaccgatcagagttgtatctgctatctgtgcacgatggacgaacat
aaaggccatgacacagtctcagctgcagcagaatggacagacaaacagaggcagttgggg
cagacccagaggagattccagcagagaatccaggagagagagaaggagctgcaggagctg
aggaaggctgtggagactctcaagagctctgcacagacagcagtggaggacagtgagagg
atcttcactgagatgatccgctccattgagagaaggtgctctgaggtgaaagagctgatc
agagatcaggagaaggctgaggtgagtcgggctgaagacctcctgaagcgactggagcag
gagattgctgagctgaagaggagagatgctgagctggagcagctttcacacacagaggat
cacatccatttcctcaaggtgacagaatttgaaataaagcatccatgtggttttaggagg
gggaaaatcttctcttttgaggctgtgaaggaatctgcctctggagtgaaggtgcagctg
gatgacatcttcaggcaggaagtagtcaagatatctgcagcagtaacgaatatccagatc
atccagtccttagaatatgctgatcctgagctcccagtcagaagaacaagcagtaagggg
ttactgccaccagagatgtctgaagtccaggctgtttttcctgaaccagtgaccagagag
gagttctcacagtactcctgtcacttcacactggatccaaacacagcaaacagacacctc
catctgtctgaggggaacaggagggtggagaggagagatgaggtccagtcatatcctgat
catccagagagatttgatgggtggggtcaggtgctgtgtagagagggtgtgtctggacgc
tgctactgggaggttgagtggagtagggggttggtttatatatcagtctcatataaaagc
atcagcaggagaggatggggtaatgagtgtgtgtttggatgtaatgatcagtcctggagt
ctggccctcaccagcagcagctcctatttcatacacaataataaacagactcaactccct
ctagtggccagctccagaataggagtgtatgtggatcacagggcaggaactctggccttc
tacagcatctctgacacaatgaccctcctgcacagagtccagaccacattcactcacaca
ctctaccctgggtttgggctatatcctggaacagtgaagctgctgtga
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