Cardinium endosymbiont cEper1 of Encarsia pergandiella: CAHE_0764
Help
Entry
CAHE_0764 CDS
T02243
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
che
Cardinium endosymbiont cEper1 of Encarsia pergandiella
Pathway
che03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
che00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAHE_0764 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
che03400
]
CAHE_0764 (mfd)
Enzymes [BR:
che01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAHE_0764 (mfd)
DNA repair and recombination proteins [BR:
che03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAHE_0764 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
LigD_N
Motif
Other DBs
NCBI-ProteinID:
CCM10541
UniProt:
K0P6Q2
LinkDB
All DBs
Position
793761..797036
Genome browser
AA seq
1091 aa
AA seq
DB search
MQINDFITLYKKKEVVTKLTDYLKEDPKNKALHLRGIQGSLDAVLTAALHQSSGHLQLVV
VENKEEAVAMYGDLSHLLPSCSVLRLPSLEEDKHKTIQQKRSAIIHAISESKAAPLVVTH
IAALLEKILDPSLVATMSYKIQVAQTLSIQNLENMLKQKGFIKVDFVYQTSQFAIRGGII
DIYPVNQSFPYRIELWGDEVSSIRIFDPKDQKSFKQTNVATIVPNPETTTEKPLRYTSFS
ACLPVGSSIWLKNKAKILAQPSGLNTAPAPSHTLETIESFIASIVPFHQILFGSVPSLMG
DNDLILDYDAEKQPLFQQNFNLLADDLHKRNQQNYDISITAASTGQLARLKTILENSAPT
TTFIPLLVSLREGYIDHTAKIVCYSDHEIFNRYYRYQPPKPHTTTEALLADACRKLEIGD
YVVHSDYGIGRFSGLHSLNIHTQKQEAIRLIYKNNDMVYVNVHELYKISKYTSKDGTTPH
MHTLGTAAWKRKKNSVKKQIKDIAKELITLYAERKKTKGFAFGQDTVLDAALASSFCHEE
TPDQAIAIDAVKQDMERPTPMDRLVCGDVGFGKTEIAIRAALKAAADGKQVAVLVPTTIL
ALQHYNSFINRLSNLPVHVGYINRFKTKQEIQQTLADTASGKVDILIGTHKLLTNSVQFK
DLGLLIIDEEQKFGVSAKEKLKKIRLNIDTLTLTATPIPRSLHFSLMGARDLSILTTPPN
HRLAIQTKVHRFDFKIIQEAIEEEMARGGQIFFVHNRVSNIQTIAQNLSDFLPTARICVA
HGQMAGSMLEEKILQFIVGRYDILVATNIIESGMDIPNVNTIIINDSHLFGLADLHQMRG
RVGRSNVQAFCHLLIPEDTTLTPEAKLRLAALEECSGLGDGFKLAMKDLDIRGAGDLLGA
AQSGFISDIGFDTYCKILEETVEEVKHSDFKTLFPQETKRVYNECSVETDCEALLPPEYV
ASTTQRITLYTRLNGLKNIDQLTEFKAELIDRFGPLPSATETLLETIQLRWEAERIGFQK
ILFKGQCLYCSLGVDFQKNNLNMWENIMHYIQQRPAYCQLKKMGQNLILMITADLDSVLS
ARNLLATIAIA
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
ttgcagatcaacgattttataacactatacaaaaaaaaagaagtagtcaccaaacttacg
gactacctaaaagaagatccaaaaaataaagccctccatttacgtggtatacaaggtagc
ttagatgctgtattgactgccgcactgcatcaaagttctggccatttacaattagtggta
gttgaaaacaaagaagaagcagtggctatgtatggagacctaagccacctattgcccagc
tgctctgtgctgcgcttacccagtttagaagaagataagcataaaacgattcaacagaaa
cgatcggccatcatacatgctataagcgaaagcaaagctgcgccattggtcgtcacacat
atagccgcactgctggaaaagatcttagatccatcgctagtggccactatgtcttacaag
atacaagtagctcaaaccctgtcgattcaaaacttggaaaacatgcttaaacaaaaagga
tttataaaagtagattttgtttaccagacaagtcaatttgcaatacgtggtggcattatt
gatatatatccagtcaaccaatcgtttccttatcgaatagaactatggggagatgaagtt
tcctcgatccgtatttttgatcccaaagaccaaaaatcttttaaacaaaccaatgttgca
acgattgtacctaacccagaaacgacaacggaaaaaccattgcgctacacttccttttca
gcttgtctaccagtaggtagctctatttggctaaaaaacaaagcaaaaatattggcacaa
ccatctggcctaaatacggcaccagccccttcccatacgctagaaacaatagaaagtttt
atagcgtctattgtaccctttcatcaaattctatttggatcggtcccatctcttatggga
gataacgatcttatactagactacgatgctgaaaaacaacccctttttcaacaaaatttt
aaccttctagcagatgacctccataaaagaaatcagcaaaactacgatatatctattaca
gccgcctctacaggacaacttgcacgactgaaaactattttagaaaatagcgcccccaca
acaacttttataccattgctggtcagtttacgcgaagggtacatagatcatacggccaaa
atagtctgctatagtgatcatgaaatttttaatagatactataggtaccaaccacccaaa
ccccatactacaacagaagctttactagccgatgcatgcaggaagctagaaattggtgat
tatgtcgtacatagtgactatggcattggccgattttctggattacattcattaaacatc
catacacagaagcaagaagccatccgactgatttataaaaacaatgatatggtctacgta
aatgtacacgaactatacaaaatcagcaaatataccagtaaggatggcacaacaccccat
atgcatacattaggtactgctgcctggaaacgtaaaaaaaacagtgttaaaaaacagatc
aaagatattgccaaagaactcattacactttatgcagaacgaaaaaaaacgaaagggttt
gcttttgggcaagatactgtactagatgcggcactagcctcttctttctgccatgaagaa
acgcctgatcaagccatagcgattgatgcagtgaagcaagacatggaacgccccacccct
atggatcgactggtatgtggcgatgtaggatttggtaaaacagaaatagccattcgtgct
gctttaaaagcagcagcagatggcaagcaagtggctgtactagtgcccactactatttta
gcactacaacactataactcttttatcaacaggctctctaatttacccgttcatgttggt
tacatcaaccgatttaaaaccaaacaagaaattcaacaaacgcttgccgataccgcttct
ggaaaggtggatattcttattggtacacacaaactgctgacgaatagtgtgcaatttaaa
gatttagggctattaattatcgatgaagaacaaaaatttggtgtaagtgccaaagaaaaa
ttgaaaaagatccgtttgaatatagacacactcactttaacggctacacctatcccacgc
agccttcatttttcactgatgggcgctagagatttaagtatacttactacccctcccaac
catagactggccatccaaacaaaggtgcaccgattcgattttaaaatcattcaagaagcc
atagaagaggaaatggctcgtggaggacaaattttttttgtgcacaatagggtaagcaat
atccagactatcgctcaaaatttatcagatttcctgccgaccgcacggatctgtgtagcc
catggtcaaatggccggatctatgctagaagaaaaaatactacaatttatagtaggccga
tacgatatactagtagccaccaatattatagaatctggaatggatatacctaacgtgaat
accattatcatcaatgatagccacctttttggccttgctgatttacatcaaatgcgtgga
agagtgggtcgttctaatgtgcaagctttttgccatttattgattccagaagataccact
cttacgccagaagcaaaactacgcctagctgcattagaggaatgttccggattaggagat
ggctttaaactggctatgaaggatctagacatacgtggcgcaggggacctattgggtgca
gcacaaagtggctttatatcagatattggtttcgatacctattgtaaaatattagaagaa
acggtagaagaggtgaagcatagtgattttaaaacattgtttccccaagaaactaaaagg
gtatataacgaatgctccgttgaaacagactgtgaagcacttttaccacctgaatatgtc
gctagtaccacccaacgaatcacactttacactaggctgaatgggcttaaaaacatagat
caattaaccgaatttaaagcagagttaatcgatagatttggtccattgcctagcgctaca
gagaccctattggaaacgatacaacttcgatgggaagcagaacggattggctttcaaaaa
attttattcaaaggccaatgcctatattgctctttaggcgttgattttcaaaaaaataat
ttgaatatgtgggaaaatattatgcactatatacaacaacgtccagcttattgtcagtta
aaaaaaatgggtcaaaacttgatactgatgattactgcagatttggatagtgttctttca
gcaagaaatctactggccactatagccatcgcttaa
DBGET
integrated database retrieval system
