Chelatococcus sp. CO-6: AL346_19410
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Entry
AL346_19410 CDS
T04040
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chel
Chelatococcus sp. CO-6
Pathway
chel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AL346_19410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chel03400
]
AL346_19410
Enzymes [BR:
chel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AL346_19410
DNA repair and recombination proteins [BR:
chel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AL346_19410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALA19184
LinkDB
All DBs
Position
complement(4152813..4155353)
Genome browser
AA seq
846 aa
AA seq
DB search
MAEARHLLREYRERRDFTRTAEPDVTAEAGTGEGLLFVVQKHAATRLHYDFRLEWQGVLK
SWAVTRGPSLDPADKRLAVRTEDHPLAYGDFEGIIPKGQYGGGTVMLWDRGTWEPVGDPD
EGLRRGKLTFRLHGERLSGEWALVRMAPKPGEKRENWLLIKHQEETSGRRRPPDILARHT
RSVASGRTMEEIAAGGRTIAPEDVAPKRRARRPAAKAAEKKAGTGGRGGHALPRWVEPQL
ATLVDAAPEGGQWLSEMKYDGYRALVAIGGGTCRVYTRNGKDWTDRFPEIAQAASHLDTS
GTLIDGEIVAFDEKGKTDFSTLQAALQEGGRGLTFFAFDLLWLDGEDVRGRPLTERKDLL
QQLLGEAGPPLIYSTHVVGNASEVNRRLCAAGHEGIIAKRAEDAYRSGRGRSWLKVKCGA
RQEFVIGGYRPSDKKGRTVASLLIGVNEGGKLVYKGRVGAFEGDHLARLEQLLASRGRKT
SPFTELPRDIARRARFVRPDIVVEVGFTEFTREGAVRHGVLKGIREDKAAREVVLETPRG
TAMQEHEARDVIAGIRLSNPDKVLFAEQGVTKADLAAHYERVAGRILPFVSERLLSLVRC
PEGAGTQCFFQKHGNKTVARELKRREITESDGERGVYLYVDDLAGLVAGVQMGTLEYHIW
GSRIDRLDQPDRLVFDLDPDEGLDFAAVRAAAFDLRERLAALGLQTVPLLTGGKGIHVIA
PLVRRADWPMVKAFARGFARLIAGEEPDRYVAQASKAKRAGRIFVDWLRNERGSTAIAPY
STRAKKNAPVATPVGWEELRTLDTAQAFTIADMERRLSMPDPWAGEAEGRQAITKTMLGK
VGAEEG
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcgcggcatctcctcagggaataccgggagcggcgggatttcaccaggaca
gccgaacccgacgtcacggccgaggccggcaccggcgaggggctgctcttcgtcgtgcag
aaacatgccgcgacgcgcctccactacgatttccgcctcgaatggcagggtgttctgaag
agctgggcggtgacacgcggcccgagcctcgaccctgccgacaagcggctcgcggtgcgg
accgaggaccatccgctcgcctatggcgacttcgagggcatcattcccaagggccagtac
ggcggcggcaccgtgatgctgtgggaccgcggcacctgggagcctgtcggcgaccctgac
gagggcctgcgccgcggcaagctgacctttcgcctccacggcgagcggctgtcgggcgaa
tgggccctcgtgcgcatggcgccgaagccgggcgagaagcgggagaactggctgctgatc
aagcatcaggaggaaacctccggccgacgccgcccgccggacatcctggcgcgccatacc
cgcagcgtcgcctccgggcgcacgatggaggaaatcgccgctggggggcgcacgatcgcc
cccgaggacgtcgcgcccaagcggcgcgcccggcggccggcggcgaaggctgcggagaaa
aaggccggcacgggcggccggggcgggcatgcgctgccgcgctgggtggagccgcagctc
gccacgctggtcgacgccgcgcccgagggcgggcaatggctgtcggagatgaaatacgac
ggctaccgcgccctggtcgccatcggcggcggcacctgccgcgtctatacccgcaacggc
aaggactggaccgatcgcttccccgagatcgcgcaggcggccagccatctcgacacgtcg
ggcaccctgatcgatggcgagatcgtcgccttcgacgagaagggcaagaccgacttttcc
accctgcaggcggcgttgcaggagggcgggagaggactgacgttcttcgccttcgatctc
ctgtggctcgacggcgaggacgtccgcgggcgtcccctcaccgagcgcaaggacctgctg
cagcagctcctcggcgaggccgggccgccgctcatctattcgacgcatgtcgtcggcaat
gcgtccgaggtgaaccggcggctgtgcgcggccgggcacgaggggatcatcgccaagcgg
gcggaggacgcctaccgctccggccgcgggcgcagctggctgaaggtgaaatgcggagcg
cgccaggagttcgtcatcggcggctacaggccgagcgacaagaagggccgcaccgtcgcc
tcgctgctgatcggcgtcaacgagggaggcaagctcgtctacaaaggacgggtgggggcc
ttcgagggcgaccatctggcgcggctggagcagctcctcgccagccgcggccgcaagacc
tcgcccttcaccgagctgccgcgcgacatcgcccgccgggcccgcttcgtgcgaccggac
atcgtcgtcgaagtcggctttactgaattcacgcgcgaaggcgccgtccgccacggcgtt
ctgaagggcatccgcgaggacaaggcggcgcgcgaggtggtgctggagacacccaggggg
acggccatgcaggagcacgaagcgcgggatgtcatcgccggcatcaggctgtccaacccg
gacaaggtgctcttcgccgagcagggcgtgacgaaggccgatctggcggcccattacgag
cgcgtggccgggcggatcctgcccttcgtctcggagcgtctcctcagcctcgtgcgctgt
cccgagggggccggcacacagtgcttcttccagaagcacggcaacaagaccgtggcccgc
gagctcaagcgccgcgagatcaccgagagcgacggcgagcgcggcgtctatctctatgtc
gacgatctcgcgggtctcgtcgccggcgtgcagatggggacgctcgaatatcacatctgg
ggctcgcgcatcgatcgcctcgaccagccggaccggctggtcttcgatctcgatcccgac
gaggggctcgacttcgccgccgtgcgcgccgccgccttcgacctgcgcgagcggctcgcg
gcgctcggccttcagaccgtgccgctgctgaccggcggcaagggcatccatgtcatcgcc
cccctcgtgcgccgggcggactggccgatggtcaaggccttcgcccgcggcttcgcccgg
ctcatcgccggggaagagccggaccgctatgtcgcccaggcctcgaaggcaaagcgcgcc
ggccgcatcttcgtcgactggctgcgcaacgagcgcggctccaccgccatcgcgccctat
tcgacgcgggcgaagaagaacgcgccggtcgcgacgccggtgggctgggaggaactgcgg
accctcgacaccgcccaggccttcaccatcgccgacatggagaggcgcctgtcgatgccg
gatccctgggcgggtgaagccgaggggcgccaggcgatcacgaagaccatgctcgggaaa
gtgggcgccgaggagggctga
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