Candidatus Cardinium hertigii: DK880_00122
Help
Entry
DK880_00122 CDS
T05479
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cher
Candidatus Cardinium hertigii
Pathway
cher03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK880_00122 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cher03400
]
DK880_00122 (mfd)
Enzymes [BR:
cher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK880_00122 (mfd)
DNA repair and recombination proteins [BR:
cher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK880_00122 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWN81459
UniProt:
A0A2Z3L7P0
LinkDB
All DBs
Position
complement(137224..140553)
Genome browser
AA seq
1109 aa
AA seq
DB search
MVINDLIALYQKNTVITALTAYPIEPASNKVCSIQGVTGSLDALLITALQYNCKQIQLVV
TEHKEEALEVYNDCRHLMAPYAVRWLPDSITEVASEETAKNIQHKRTEIIHAINAQQSVS
VVVASVAALFEKIIEPSLLHKKAYPISIGQILSIQTIEKVLKEQQFIKVDFVSSEGQFAI
RGGIVDIYSATQSLPCRIELWGDQVANIRIFNPKDQKSFKEITHTTIASNQAILQQRKGI
AYTSFTSCLPNGSCIWIKNPSKVLHQLQEWHNYYATQPVATTTVPYESAESLLTSLTAFR
QIHFESEKTMVPDSTNATNLAYAAEPQPLFKQNFDRLAKDLYKWNQNNYKVFITATTMGQ
LERINTILEEKEPQPHFIPLIIGLRSGYIDHSAKVVCYTEHQFFNRYYTPSSPKHYPLTK
TVPMEGGKNFQVGDYVVHMDHGIGRFAGLHTLAINGHKQEAIRLIYKNNDTIYVNVQELY
KVNKYSAKGGEPVNMHKLGTSAWKNKKNAVKKEIKDVAKELITLYAKRKQTVGFAFSKDT
PLDMALSASFPYEETADQALAIAAVKEDMERSSPMDRLICGDVGFGKTEIAIRAAFKAAI
QGKQVAVLVPTTILALQHYNSFIHRLADFPIQVSYINRFKTKQEIQQTLADTASGKIHIL
IGTHKLLTKQVRFKDLGLLIIDEEQKFGVMAKEKLKQLRLNIDTLTLTATPIPRTLHFSL
MGARDLSILMTPPSNRRPIQTQLQYFNAKVIKQAIEAEIIRNGQVFFIHNKISTIHITAQ
ELSLWLPTARICIAHGQMAGSLLEAKIGQFITGKYDILVATSIIESGMDMPNVNTIIIND
SHLLGLADLHQMRGRVGRSNIQAFCYLLIPPDKLLSSEAKLRLRALEEFSALGDGFKLAM
SDLDIRGTGDLLGAAQSGFITDIGFETYCKILEEAVTEVKCADFESLFESDLQKKEVYND
CSIETDCEALLPAEYVQNTAHRMMLYTRLNGIKDNTQLTQFKEELVDRFGPLPAATEVLL
ETLQLRWLAQRMGFQRLVFKCQTLSCHVGADFQKRNPTIWEQLIQYIQQYPSSCQLRKLA
NSVMLTITKPISTVRDAKELLVDLLVKAT
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
ttggttatcaacgatcttatagcactataccaaaaaaacacagtcataacagcgttaact
gcctacccaatagagccagcatcaaataaagtatgctctatacaaggtgttacagggagc
ttagatgccttattgatcacagcgttgcaatacaattgcaagcaaatacaattggttgta
acggagcataaagaagaagcattagaggtttacaatgattgtaggcatctaatggcacct
tatgctgtccggtggctgcctgatagtataaccgaagttgcttcagaagaaacagctaaa
aatattcagcataagcgaacagaaattattcatgctatcaatgcacaacaatctgtttcg
gtagtggttgcctctgtggcagctctctttgagaaaattatagaaccctctcttttacat
aaaaaggcttaccctataagcattgggcaaatcctatcaatccagacaatagaaaaagta
cttaaagagcaacagtttataaaagtagattttgtttctagtgaaggccaatttgccata
cgtgggggcattgtagatatttattcagctacccaatcattaccctgccgaatagaatta
tggggggatcaggttgctaatattcgtatttttaatcctaaagatcagaaatcttttaaa
gaaatcacccatacaactattgcctccaatcaagctattctccagcagagaaagggtata
gcttatacttcttttaccagctgtttaccgaatggaagctgtatttggattaaaaaccca
agcaaagttttacatcagctacaagaatggcataactattatgctacgcaacccgtagct
acaactactgtcccgtatgaaagcgcagaaagtttattaacctccctgactgcttttcgg
caaatccattttgaatcagaaaaaacgatggttcccgatagcacgaacgcaacaaaccta
gcgtatgctgccgaaccacagcctctttttaaacaaaattttgaccgcttagctaaggac
ctctataagtggaaccagaataactataaggtatttattacagccactacgatggggcaa
ttagaacggattaatactattttagaggaaaaagaaccccaaccacactttataccgctg
attattggtttgcgatccggttatatcgatcatagcgctaaggtggtttgctatacagag
catcaattttttaacagatattatacaccttcctcacctaaacactaccctttaacaaaa
acagtgcctatggaggggggtaaaaattttcaggtcggggattacgtggtgcacatggat
catgggattggtcgatttgctggtctgcatactttagctattaatgggcataaacaagaa
gcaattcgattaatttataaaaataatgatactatttacgtaaatgtacaggagctatat
aaagtaaacaaatacagtgccaaagggggggaacccgtaaacatgcataagttaggtacc
tccgcctggaaaaataaaaaaaatgccgttaaaaaagagattaaagatgttgcgaaggaa
ctcataacgctttatgcaaaacgcaagcaaacagtagggtttgctttttcaaaagatacc
cctttagatatggcattgtctgcttctttcccttacgaagaaacagctgaccaagcatta
gctattgcagctgtaaaagaagatatggagcgctctagtcccatggatagacttatttgt
ggagacgtagggtttggcaaaacggaaatagctattcgtgctgcttttaaagcagccata
cagggtaagcaggtagctgttctagtacctacaaccattttagctttacagcattacaat
tcctttattcataggcttgctgattttcctatacaagtaagctacatcaaccgctttaaa
acaaaacaagaaatacaacaaacattagctgatacagcttctggtaagatccatatactg
attggcacacataagctattgacaaagcaggtgcggtttaaagatttggggttgctcatc
atcgacgaagaacagaaatttggtgtaatggccaaagaaaaattaaaacagttgcgttta
aatatagataccttaaccctaacagcaacacctattccacgtacccttcatttttctctt
atgggggcaagagatttaagtatccttatgacgccaccttccaataggcgtcctatacaa
acacagctgcaatattttaatgctaaagttatcaaacaagcgatagaagcagaaataata
cgtaatggacaggttttttttatacacaataagatcagtaccattcatataactgcccag
gagttatctctatggctgcctactgcacgtatttgtatagcacatggacaaatggcagga
tctctactagaagcaaaaataggacagtttataacaggaaaatatgatatcctggtagct
acaagtattatagagtctggaatggatatgcctaatgttaataccattattattaatgat
agccatcttttaggtcttgctgatttgcatcaaatgcgtggaagggtaggtcgctccaat
attcaagctttttgttacctattgattccaccagataagctgcttagctcagaagcaaaa
ttaagactccgtgcattagaagaattttccgcattgggagatggttttaaattggccatg
agtgatctagatatacgtggtacgggagacctactaggtgcagcgcaaagtggctttata
acagatattggttttgaaacgtattgtaaaatcctagaagaagccgtaacagaagttaag
tgtgctgatttcgagtcattatttgagagtgatttacaaaaaaaagaagtgtataatgac
tgttctattgaaacagattgtgaagcattgttaccagctgaatatgtacagaacacagca
caccgtatgatgctttatacaagattaaatggaattaaagataatacccaattaacccaa
tttaaagaggaattagtagataggtttggaccgctccctgctgctacggaagttctattg
gaaacactacagctgcggtggctggcacagcgtatgggttttcaaagattggtgttcaaa
tgccaaacattgtcttgtcatgtaggagcggatttccaaaaaaggaatcctaccatctgg
gaacagctcatccaatatatacagcaatacccaagcagctgccagctaagaaagttagcg
aatagtgtaatgcttaccattactaaacctatttctactgttagggatgcaaaggaactg
ctcgttgatctattggttaaagcaacttga
DBGET
integrated database retrieval system
