Chitinophaga pendula: KTO58_25785
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Entry
KTO58_25785 CDS
T08407
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chf
Chitinophaga pendula
Pathway
chf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KTO58_25785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chf03400
]
KTO58_25785 (mfd)
Enzymes [BR:
chf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KTO58_25785 (mfd)
DNA repair and recombination proteins [BR:
chf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KTO58_25785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UCJ07038
LinkDB
All DBs
Position
6849952..6853323
Genome browser
AA seq
1123 aa
AA seq
DB search
MNLQGILQLYQRDPRLQQLVKGFQLPAPHYFQLTGLTGSAVSFVTAAAWAHAEANHLFIL
NDREEAAYFHNDLEHLTEALDIFYFPDSFKKTGHFAELNSSHSMLRTEALMKFSGHTIRK
KAMVTYPEALWEKVAGAIEFNSNMVQLKVGDVLKVDALLEKLVGWGFKATDFVYEPGQYA
VRGGILDIYSFGNEKPYRIELFGEDIDSIRLFDAETQLSERKLTQVTLIANMDAHVSGHK
KTSLLEFLPENTVVWFKDPGYIQEVVSQMEERLAAWLEGGQKVRVGDDEEMTITADDFVP
AHTLLQELLQRHCVLFGHRNWWQETNRDAQPVNFETQEQPVFNRQFDLLIKDLSQHNTRN
YSLFIFAENARQLERLRSIFEDLKATFTFYPIPVAISNGFIDHGLKMICYTDHQIFQRYH
KYKVKQAYNKNKAITMKTLRELQSGDFVTHIDHGVGMYSGLQKIEVGGKMQEAIRIIYKN
NDLLYVNINSLHKISKYTGKEGVEPRVNKLGSDAWDKLKEKAKTQVKDIAKDLIRLYAAR
KAQQGFTHTPDTYLQTELEASFIYEDTPDQSKATADVKRDMEAPAPMDRLVCGDVGFGKT
EVAVRAAFKSIVDGKQAAVLVPTTILAFQHFKTFSERLKDFPCTVDYLNRFKSSKEKKET
LQKLADGKIDIIIGTHALLGKEVKFKDLGVLVVDEEQKFGVSAKEKLKQLKVNVDTLTLT
ATPIPRTLQFSLMGARDLSIINTPPPNRQPIETEVHVFDHDLIRDAIYYETERGGQVYFI
HNRIKGLQEIAGLIQGLCPDLSVSTAHGQLEGHKLEEVILDFIDRKFDVLVCTNIVESGV
DIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPVSTLPADSRKRLQTLEQ
HSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMSEIGFDMYQKILDEAIRELKQTEFRDLF
KEQLEQKKDFVSDCTIDTDLEILIPDSYVESIQERLNLYQELDNTTQEAKLTAFAEELKD
RFGPLPEPVEDLLTTIRCRWMAIALGFEKMMLKEEKLRCYFINNPDSPYFESPTFNHILT
YVQTRVNNARLKQVGKNFMLVVDRIRSMTDLYKFLRAMEDARN
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaacttacagggtatattacaactgtaccaacgtgatccccgcctgcaacagctggtg
aagggattccaattgcctgccccgcattattttcagttaacaggcctcacgggcagcgca
gttagttttgttacagcagcagcatgggcacatgcagaggccaaccatctctttatcctc
aacgatagagaagaggccgcttattttcataatgacctcgaacatctcaccgaggccctc
gatatcttttacttcccggactccttcaaaaagaccggccacttcgcagagctcaacagc
agccatagcatgctgcgcaccgaagccctgatgaaattctccggtcataccatccgcaag
aaagcgatggtaacctacccggaagccttgtgggaaaaagtagccggcgccatcgagttc
aacagcaacatggttcagctcaaggtcggcgacgtcctcaaagtagatgcactgctcgag
aaattggtcggatggggattcaaggcgacagatttcgtatacgagccaggacagtatgcc
gtcagaggtggcatactcgacatatattccttcggaaatgagaaaccctatcgtatagag
ctgtttggagaagatatagactccatccgcctcttcgatgcggagacccagctgagcgaa
cgtaaactcacccaggtgaccctcattgccaacatggacgcccacgtatccggtcataaa
aagacctccctgctggagttcctgcctgaaaataccgtagtctggttcaaagatcctgga
tatattcaggaagttgtctcccagatggaagaacgactggcggcctggctggaaggtgga
cagaaagtacgggtgggcgacgatgaagaaatgaccatcaccgcagatgacttcgtaccc
gcacacaccctcctgcaagaattgttacaacgccattgcgtcctgttcggacatcgcaac
tggtggcaggaaaccaaccgcgacgcacaaccggtcaacttcgaaacacaggaacaaccc
gtgttcaaccggcagtttgatctgctcatcaaagacctctcccaacacaacacgaggaac
tactccctgtttattttcgcagaaaatgcccgccagctggaacgcctgcgcagcatcttc
gaagatctcaaggccaccttcaccttctatcccatacccgttgccatcagcaacggattc
atagatcatggcctgaaaatgatctgttatacagaccaccagatcttccagcggtatcat
aaatacaaagtaaaacaggcctataataaaaataaggctattaccatgaagaccctgcgc
gaactgcagtcaggcgacttcgtgacacatatcgatcatggtgtaggtatgtacagcggc
ttacaaaagatcgaagtaggtggtaaaatgcaggaagcgatccgcatcatctacaaaaac
aacgacctgctgtatgtcaatatcaactcccttcataaaatcagtaaatacaccgggaag
gaaggcgtagaaccaagagtaaataaattaggtagtgatgcctgggataagctgaaagaa
aaagcgaaaacacaggtaaaagatatcgctaaagacctgatacgtttatatgctgcgcgt
aaagcccaacaaggcttcacacacacgccggatacctacctgcagacagaactggaggca
tccttcatttacgaagatacccccgatcagagcaaagctaccgccgatgtgaaacgcgac
atggaagcgcctgcaccgatggacagactcgtctgcggagatgtgggattcggcaaaacg
gaagtagccgtacgtgcagcattcaaaagcatagtagatggtaaacaggcagccgtactg
gtacctactactatcctggctttccagcacttcaagaccttctccgagcgtctgaaggat
ttcccttgtaccgtcgactaccttaaccggtttaaatcatccaaagagaaaaaagaaacc
ctgcagaaactggcagatggtaagatagatatcatcatcggtacacatgcgctgttgggt
aaagaagtgaagttcaaagacctgggcgtactcgtagtagatgaggaacagaaattcggt
gtatccgcaaaggaaaagctaaagcaactgaaggtgaatgtagatacgcttactctaact
gctacgcctataccaagaacgttgcagttctcattaatgggagcaagagatctttccatc
atcaacacgccgccgccaaacaggcagccgatcgaaacagaagtgcatgtcttcgaccat
gacctcatccgcgacgcgatctattatgaaacagaacgtggcgggcaggtatacttcata
cataaccgtattaaaggcctgcaggagattgcaggcctcatacagggcctatgcccggac
ctctcggtatctactgctcacggacagctggaggggcataaactggaagaagtgatcctc
gatttcatcgatcgcaaatttgatgtactggtatgtacgaacatcgtggaaagcggtgtg
gatattcctaacgctaataccatcatcatcaacaatgcacaccacttcggactcagcgat
ctccaccagctgagagggcgtgtagggcgtagtaacaagaaagcattttgctacctgttg
gccccacctgtcagcacattgccggcagatagccgcaaacgactgcagaccctggagcaa
cacagtgaactgggtagcggtttccagatcgctatgcgtgaccttgatatacgtggagcg
ggtaacctgctgggtggcgaacaaagtggcttcatgtcggagatagggtttgatatgtac
cagaagatcctcgatgaagcaattcgcgaactgaaacaaaccgaattccgcgacctgttc
aaagaacaactggagcagaaaaaagacttcgtgagcgactgtaccatcgataccgacctg
gaaatactgatccccgacagctatgtagaaagtatccaggaacgtctgaacttgtaccag
gagctggacaataccacacaagaagcaaaactgaccgctttcgcggaagagctgaaagat
cgttttggcccacttcctgagccggtagaggacttgctcaccactatccgttgccgttgg
atggcaatagccctgggcttcgaaaagatgatgctgaaagaagaaaaactacgctgctac
tttatcaacaacccggattctccctactttgaatcccctactttcaatcacattcttact
tatgtgcaaaccagggtgaataatgcacgccttaaacaggtaggtaaaaacttcatgctg
gtagtagaccggatacgctctatgactgacctctacaagttcctgcgtgctatggaagat
gcaaggaactaa
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