Capnocytophaga haemolytica: AXF12_08625
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Entry
AXF12_08625 CDS
T04287
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chg
Capnocytophaga haemolytica
Pathway
chg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXF12_08625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chg03400
]
AXF12_08625
Enzymes [BR:
chg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF12_08625
DNA repair and recombination proteins [BR:
chg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXF12_08625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMD85569
UniProt:
A0A0X8JAY8
LinkDB
All DBs
Position
1915061..1918375
Genome browser
AA seq
1104 aa
AA seq
DB search
MKELLQQFATRNSYKSLINNIEEGKNTAVKGVAGAAFSFLIANIFQRKARPTFVMLNDKE
ESAYILNDLERLLGEQCVLFYPDSYRRPYQIEQTDNANVLLRAEVLNRFSQNKNTIVVTY
PEALFEKVITQGQLEKNTLSIAKGEQISLDFLNEILFSYQFIRTDFVTEPGEFSIRGGIV
DVFSFSNNEPYRIEFFGNEIESIRTFDVETQLSTAQLSQISIIPNVENKHSNEIRQTFLD
YLPDDTLIFAKDMDTFGEKIDKLFKKASETYQTLPNEVKHITPEALFCQKEELLSRIDTL
QHIFTGFSTSSLPQIDFHTVPQPSFGKQFGLLVNYFNEKHDQGYVNYLLCASEQQEKRFR
DIFEELQQSVHYKTFVLSLHAGFIDLENHCNIFTDHQFFERYHKFSLKNGYAKKQAITIK
ELLQLQVGDYVTHIDHGIGKFAGLQKIDVGGKMQEAIKLIYGDRDVLFVSIHALHKITKY
NGKDGAPPKIYKLGSNAWKALKQKTKARVKEIAFNLIQLYAKRKEAKGFAFSQDSYLQNE
LEASFLYEDTPDQSKTTEEVKNDMQSDRPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQV
AVLVPTTVLAFQHYKTFTSRLKDLPVRVEYLNRFRTLKKKSQILKDLASGQIDILIGTHQ
IVGEKVIYKDLGLLIVDEEQKFGVNTKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARD
LSVINTPPPNRYPIDSQLINFDEETIRDAIVYEIQRGGQVFFMHNRVENIQELAGILSRL
VPEAKIAVGHGQMDGKKLEETMLRFMDGTYDVLVATTIIESGLDVPNANTIFINNAHNFG
LSDLHQMRGRVGRSNKKAFCYFITPPLSSMSEDARRRMEAISQYTDLGSGLNIALKDLEI
RGAGDLLGGEQSGFINEIGFDTYQKILQEAITELKEQDFADIYGVEEENYRTDTQIDTDF
ELLFPDTYINRVAERLNLYNELSNLTDEVQLQQYEHNLIDRFGKLPPQAVDLLTSVRLKW
LASSLGMEKLVMKLGKMTAYFIFNPESKFYQGSVFQNILQYAQHHPSVCHIQEKETRGGL
RLLMIFDHIKSVQQALSVMQAIKK
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaattattacaacaatttgcaacccgcaatagctataaatcactgataaataac
atagaagaaggaaaaaacaccgctgtgaagggcgtcgcaggagctgctttctcctttctt
atcgcaaatatctttcaacgcaaggcgcgccctacctttgtgatgctcaacgacaaagaa
gaaagtgcctatatcctcaacgacctcgaacgattgctcggtgagcagtgcgtgctcttc
tacccagatagctatcgccgcccttaccaaatcgagcagaccgataacgccaacgtattg
ctgcgcgctgaggtgctcaaccgtttctcccaaaataaaaacaccatcgtggtaacctac
cccgaagcactcttcgagaaggtaatcacacaagggcaattagaaaaaaataccctctca
atagcaaaaggcgagcaaatttcactcgatttcctcaatgaaatcctattttcataccaa
tttattagaacagacttcgttaccgagcctggtgagttctccatccgtggaggtatcgtc
gatgttttctcattttcgaacaacgaaccctatcgcattgagttttttggcaatgaaatt
gagagtatccgcacttttgatgtcgaaacacaactatccacagcgcaacttagccaaata
agcatcatacctaacgtagaaaacaagcattctaacgaaataagacaaacatttctcgat
tatttgcccgatgacacccttatattcgcaaaagatatggatacttttggcgaaaaaatc
gataaactattcaaaaaagcctcagaaacctaccaaacgctgccaaatgaagtaaaacac
atcaccccagaagcccttttctgccaaaaagaagaactcctatcgagaattgatacccta
caacacatttttacaggattttcaacaagctcgctaccccaaatagactttcacaccgta
ccacaaccctcattcggaaagcaatttggcctgttggtgaactatttcaacgaaaagcac
gatcaaggctacgtaaattacctattatgcgcctccgaacaacaagaaaagcgttttcgc
gacatatttgaggaacttcaacagagcgttcactataaaactttcgtactttccctccac
gcaggctttatcgacctggaaaatcactgtaatatcttcaccgaccaccaattttttgag
cgataccacaaattttccctcaaaaatgggtacgccaagaagcaagccatcaccattaag
gaacttttgcaactgcaagtaggtgattacgtaacacatatcgatcacggcataggcaaa
ttcgctggtttgcagaaaatagacgtcggtgggaagatgcaagaggctatcaaactcatc
tatggcgaccgtgatgtgctctttgtcagcattcacgccctacataagatcactaaatac
aacggaaaggacggtgcacctccaaaaatctacaaattaggctccaacgcctggaaagca
ctcaaacaaaagaccaaagcacgcgtcaaagagatcgcttttaacctcattcagctatat
gcaaagcgaaaagaggctaaaggtttcgctttttcgcaagattcataccttcagaacgag
cttgaagcctcttttctctatgaagacacccccgatcagagtaaaaccaccgaagaagtg
aagaatgatatgcaaagcgaccgtcctatggatcgattaatctgtggtgatgtcggattt
gggaagaccgaagtagctatcagggcagcttttaaggcagttgacaacggaaaacaagtc
gccgtgcttgttcctaccaccgttctcgcctttcagcactacaaaaccttcacttcacga
ctgaaagacctccccgtacgcgtggaatacctcaatcgcttccgaactcttaaaaaaaag
agccaaatactcaaagatttagcctctgggcagatcgatatcctcattggcacccatcaa
atcgtcggcgagaaggtcatttataaagatttaggcctacttatcgtcgatgaagagcaa
aaatttggcgtaaataccaaggataagctcaaaaccttaaaagaaaacttagatgtgctg
acccttaccgccacacccatccctcgaacgctgcaattcagcctaatggcagcccgagac
ctctcagtgatcaatacgccacccccaaaccgctacccaatcgatagtcagctcataaat
ttcgatgaagaaaccatcagagacgccattgtttatgaaattcagcgtggtggacaggtg
ttttttatgcataatcgtgttgaaaacatccaagaactcgcggggatcctttctcggctt
gttccagaggcaaaaatagccgtcggacacggacaaatggacggtaaaaagctcgaagaa
acaatgcttaggtttatggatggcacttacgacgtgcttgtggcgactaccatcattgaa
agtggcttagatgtgcccaatgccaacaccatcttcataaataatgcgcataacttcggc
ctttccgatctacatcagatgcgtgggcgtgtggggcgaagcaataagaaggctttttgc
tattttataacccctccgctctcatcgatgagtgaagatgcccgtcggcgtatggaagcc
atctctcagtacactgatcttggcagcggactgaatattgccctcaaagatctcgaaatc
cgcggtgctggcgaccttcttggaggggaacaaagcggatttatcaacgaaataggcttc
gacacctatcaaaagatattgcaggaggcaattaccgagcttaaagagcaagattttgcc
gatatttacggcgttgaagaggaaaactaccgaaccgacacccagatagacaccgatttt
gagctacttttccccgatacgtatatcaatcgcgttgccgaacgccttaatttgtataac
gaactgagcaacctcaccgatgaggtgcaattgcagcaatatgagcataaccttatcgat
cgttttggtaaattacccccacaagcagtcgatctccttacgagtgtacgcctaaaatgg
cttgcttcatccttaggaatggaaaaattagtgatgaaattgggtaaaatgaccgcttat
ttcattttcaaccccgaaagtaagttctatcaaggctccgttttccaaaatatactgcaa
tatgcgcaacatcacccctccgtttgccatatacaagagaaagaaacccgaggaggactg
cgtcttcttatgattttcgaccatataaagagcgttcaacaagcattatcggtaatgcaa
gccatcaaaaagtaa
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