Chryseobacterium glaciei: A0O34_07885
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Entry
A0O34_07885 CDS
T04575
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chh
Chryseobacterium glaciei
Pathway
chh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0O34_07885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chh03400
]
A0O34_07885
Enzymes [BR:
chh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0O34_07885
DNA repair and recombination proteins [BR:
chh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0O34_07885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
PPARgamma_N
DUF6870
AAA_25
Latarcin
Motif
Other DBs
NCBI-ProteinID:
ANF50442
UniProt:
A0A172XUC3
LinkDB
All DBs
Position
complement(1772413..1775784)
Genome browser
AA seq
1123 aa
AA seq
DB search
MQLKTINEKFLPDLLKKEFGKEIFTQLENNQHISVRGSAGSSGSIFVAELFLTQKHTILY
VVDDKEDALYINTELEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYSGALSEKVLKKEDFKAISHQIKVGDQLDFDFVDELLTHYNFQQTDFVSEPGEF
SVRGGIVDVFSYSYEKPYRVTFFGNEVESIKTFDIETQLSIEKVKELQLVSNMNFSVSGT
RVSLLQLLPKESFVVSKNGVVGLQRIKSFYEKSLEKFETLSKDIAHRAPQELFISDQEFL
FDYKKFKTVDFSSVSIEGLKDISEVKIEQTSQPTFHKNFELLIEDLEEKQGEGFETWISF
STEKQKERLESIFEELEHEVPFKSFKSELHEGFVDNDHKLLVYTDHQIFDRYQRYKAKNN
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKFNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIRLYAERKTAKGFA
FTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAVRAA
FKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNVDYVNRFRTAKQKSETLDALKKG
KVDIIIGTHQLASASVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLVGFNEEIIRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVIIGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTADARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDKDFEDLFDNEEDR
NKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKLAEIGNEADLQKFETELIDRFGN
LPNEAINLLKSVALKWLASDIGFEKIVMKNGVFLGYFPANPQDKFYQTSKFKNIINYLTL
NPAEAQLKEKVSKDGNHLMMRKDSIINVDEVNYLLRSILKNEN
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaacaatcaacgaaaagtttcttccggatttactgaaaaaggaatttgga
aaagaaatttttactcaactggaaaataatcaacacatttctgtaagaggaagtgcagga
tcttcgggttctatttttgtagcagaacttttcttaacgcaaaaacatacaattctttat
gtagttgatgataaggaagatgctttatacatcaatacagaactggaagatctgctggga
aaagagaaggttttgtatttccctgcaactcatcttgagccttatcaggttgaaaaaacg
cagaatgccaatttggttttaagaactgaggttctaaataaaataaattcaggcagatct
ccgaaagttattgttgcttattccggggctttatcggaaaaggttttaaagaaagaagat
tttaaagcaatttctcatcagatcaaagtgggcgaccagcttgactttgattttgtggat
gaattacttacgcattacaatttccaacagacggattttgtttccgaaccgggcgaattt
tctgtgagaggaggaattgtagacgttttttcttattcttacgaaaagccttaccgtgta
actttttttggaaatgaggttgaaagcataaaaacttttgatattgaaacccagctttcc
atcgagaaagttaaagaattacaattggtttccaatatgaacttttcagtttcaggaacc
agagtttctttgcttcaattattgccgaaagagagttttgttgtttctaaaaatggagtt
gtaggacttcagagaattaaatcattctacgaaaagtctctggaaaaatttgaaacatta
agtaaagatatagctcacagagcgccacaggaattatttatttctgatcaggaatttttg
tttgattataaaaaatttaaaacagttgatttcagcagtgtttcgattgaaggtttaaaa
gatatttctgaggttaaaattgagcagacttcacaaccaacttttcataaaaactttgaa
ttattaattgaagatttagaagagaaacaaggtgaaggtttcgaaacctggatttctttc
tctacagaaaagcaaaaagaaagactcgaatctatttttgaagaactggagcatgaagta
ccttttaaaagctttaaatctgaacttcatgaaggatttgtagataacgaccacaagctt
ttggtctacacagatcaccagatattcgaccgttaccaaagatataaagcgaaaaacaac
ttcgcaaaatctgaacagcttaccctaaaagatctgatgtctctgaaaattggagattac
attgctcacatcgatcacggaattggaaaattcatgggattggtaaaggtgaataatgac
ggtaaaattcaggaatgttttaaactgacttataaaaatggagacttattatatgtaagt
attcattcacttcataagatttcaaaattcaatgggccggacggaaaagaaattgttcta
agcaagttgggatcgcccgcctggaaatcattaaaacaaaaaacaaaagctaaggtaaaa
cagattgctttcgaccttatcagattatatgctgaaagaaaaacggcaaaaggtttcgct
tttacaccagattcttaccttcaaaatgagctggaagcaagttttatttatgaagatact
cccgatcaggaaaaagcaaccattgacgtaaaaaaagatatggaagccgatactgtaatg
gacaggttagtctgcggagatgtaggtttcggtaaaacagaagttgctgttcgtgctgct
ttcaaagcggcgacagatgggaagcaggttgcgattttagttccaacaacgattttggcc
tttcaacattacagaagttttaaagaaaggttaaaagattttccggtaaatgtagattat
gtcaaccgtttcagaacggcaaaacaaaaatctgaaacattggacgctttaaagaaaggg
aaagtcgatattataataggaacgcatcaattggcaagcgcaagtgttaagtttaaagat
ttaggtttattaattattgatgaagagcataaattcggagtttcggtaaaagataaattg
aagactttaaaaagtaatgttgatacattgaccttaacggcaacaccaattccgagaaca
ttacagttttcattgatggctgcacgagatttatcggtaattaaaactccaccgccaaac
agacagcctgtagatacacagcttgttggttttaatgaagaaataattcgtgatgcagtt
tcttatgaattgcaaagagacggacaggtttattttattaataatagaattgaaaacctt
aaagatattgccggattaatccaaaggttggttcctgatgcaagagtaatcatcggtcat
ggtcaaatggaaggaaagcagctcgaaaagaatgttcttgatttcatggaaggtaaatat
gacgttctggtttccacaacaattgttgaaagtggagtagacgttccgaatgcgaatacc
atttttattaatgatgctcagcgattcgggatggcagatcttcaccagatgagaggaagg
gtaggacgaagcaacagaaaagcattttgttatttgatcactccgccttatgatatgatg
actgcagatgcaagaaaacgtttggaagcgattgagcagttttcggatcttggaagtggt
ttccagattgcgatgaaagatttggaaattcgtggagcaggagatttattaggtgccgaa
caaagtggatttattaatgaaatgggctttgaaacctatcaaaaattaatgcaggaagcg
ctggaagaactgaaagacgataaagattttgaagatttatttgataatgaagaagatcga
aataagctctttaaatctgtaaaagatgtcaacattgataccgatctggaattaatgctt
cccgacttttatatctctaatactgaagaacgattgttactttatcagaagctcgcggaa
attggaaatgaggcagatctacaaaaatttgaaacagaattaatcgaccgttttggaaat
ttacccaatgaagctattaatttattaaagagtgtggctctaaaatggctcgcttcagat
attggttttgaaaagattgtcatgaaaaatggggtgtttttagggtacttcccggctaac
cctcaagacaaattctaccagacaagtaagtttaaaaatattattaactatctaacttta
aatcctgcggaagcccaattgaaggagaaagtaagtaaggatggaaatcacctaatgatg
agaaaagatagcataataaatgtcgatgaggtgaattatctactaagatcaattttaaaa
aatgaaaattaa
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