Colletotrichum higginsianum: CH63R_02092
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Entry
CH63R_02092 CDS
T08176
Name
(RefSeq) DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CH63R_02092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_02092
Enzymes [BR:
chig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CH63R_02092
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CH63R_02092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
RNA_ligase
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
28861174
NCBI-ProteinID:
XP_018161883
UniProt:
H1V3A2
LinkDB
All DBs
Position
2:complement(1110941..1113988)
Genome browser
AA seq
998 aa
AA seq
DB search
MSQRQRPRSPNGAAQEEEEKQYLIGGMTLEELKEKYPNRPRNHSQTMRFSELFKSLFNPL
NENKKQPAGRGPPRAKKGPHGPTKLSPQEQRRHIIERFISRWRNDVGNDIYPALRLILPD
KDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGHNLLHWKLPGHTTASRMAGDFAGRCFEV
LTKRPMRIEVGDMTIAEVNELLDRLAASTGELENLEVFEIFYERMNAEEMMWLIRIVLKQ
MKVGATERTFLDLWHPDGEALFSVSSSLRRVCWELYDPQVRLEQEDTGVCLMECFQPQLA
QFQMPSSFQKMVDYLRPTEEDPEFWIEEKLDGERMQLHVTEDSSVPGGRRFGFWSRKAKD
YTYLYGNGLRDEKGALTRHLGDAFATGVRNLILDGEMITWDPEVDKIMPFGTLKTAALAE
QNNPYNNSGPRPLYRVFDILLLNDKPLTQYTLRDRRQALSKAVKGVHRRLEIHDYEVATS
PDAIEPLLRKVVAEASEGLVLKNPRSMYRLNSRNDDWLKVKPEYMSEFGESLDCVVVGGY
YGSGRRGGALSSFMCGLRVSENHIQAGANPEKCFSFFKVGGGFRAEDYAEIRHRTDGKWM
QWDPRKPPVEFVELAGGDRQFERPDVWIRPRDSVVLEAKAASIGSSDQFSLGFTLRFPRF
RRLRSDKNWDEGLSVQEFLDLRKRVEEEAKEKTMSVENRKRKSVKRAKREVVIAGTENMP
AQFEGQKSKLFDGLEFCVLSESLRPFKKTKAQLETLIKENGGRVSQRAIPRSEMILVADK
NVIKVASLVKEGQKEGGVDIIKPKWIQDCLEQADESFLLPYEDRHLQHATEALKTVALQN
TDMYGDSYARNIGLDELRAIFKSMPKREPDTEPFDKSQFLNQLEERGHGIGQLKGLIFRR
CTVHLHEANEEGERDDINMLKYMNYLTFGGARLASGADDEGATHIVLIGTGDGCKEAAED
LRRETSSRRKIPHIVTRHWVEDCWREKTLLDEERYRRI
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacgacagcgaccccggtcgcccaatggtgctgcacaagaagaagaagagaaa
caatatctcatcggcggcatgactctggaggaactcaaagagaaatatcccaaccgcccg
cgtaaccactcgcagacgatgcggttttccgagttgtttaagagtctcttcaatcctctc
aatgagaacaagaagcagccggccggtcgcggcccacctcgcgccaaaaagggaccccac
ggtcccactaagttgtcacctcaagagcagaggcgacacatcatcgagcgattcatctcg
cgatggcgaaacgatgtggggaacgacatttacccagcgctgcgattgatactgcccgac
aaggaccgagatcgtggcgtctatggcctgaaagagaatgctataggaaagcttctcgtt
aagctaatgaagattgataagaactcagaagatggacacaaccttctccattggaagctc
cccggtcacaccactgcgtcgcggatggccggtgactttgcgggccggtgcttcgaggtt
ctaaccaagcgaccgatgcgaatagaagttggcgatatgacgatcgcggaagtaaacgag
ttgctggacaggctcgccgcgtcgacgggggaacttgagaaccttgaggttttcgaaatc
ttttacgagcgcatgaatgccgaggaaatgatgtggcttatccgtatcgttttgaagcaa
atgaaagtcggagcaaccgagaggacctttcttgacctatggcatccggatggcgaggcg
ctcttcagcgtctcttcgagcttgcgacgggtttgctgggaattgtacgatccccaggtc
cgtctagagcaggaggatacgggcgtctgtctcatggagtgctttcaaccacagctcgcc
cagttccagatgccctcttcattccaaaagatggtcgattaccttcgaccaaccgaagaa
gaccccgagttctggattgaagaaaagttggacggcgaacgcatgcagctgcacgtcacg
gaagattcgagtgttccgggaggacgacgctttggtttctggtcccgcaaggccaaagat
tatacgtacctatacggcaacggccttagggatgagaagggggccttaacccgccacctc
ggagacgcttttgcgacaggagtacggaacctcatcttggatggagagatgatcacctgg
gatcccgaagttgacaaaatcatgccgtttggaaccctcaagacagctgccttggctgaa
cagaacaacccatacaacaactccggcccccgcccgctctaccgtgtctttgacattctg
ctactcaacgacaagccgttgactcagtataccctgcgagatcgccggcaagcattgtcc
aaggcggtaaaaggcgtccacaggaggctggagatccacgattacgaagtcgccacgtcg
ccggatgccatcgagccgctgctccgcaaagttgtcgccgaggcatcggaaggactcgtc
ctcaaaaacccacgatcaatgtacagactcaacagccgcaacgacgactggctcaaggtg
aagccagaatacatgtctgaattcggagagtcgttagactgcgtcgttgttggcggctac
tacggctcaggccgcagaggcggtgcgctttccagcttcatgtgcggtctccgtgtcagc
gaaaaccatatccaagctggcgccaacccggagaagtgcttcagcttcttcaaagtgggt
ggtggcttccgagccgaagattacgcagagattcgtcacaggacggacggcaagtggatg
caatgggatccgaggaaaccgcccgttgaattcgtcgagctcgccggcggcgaccggcaa
ttcgagaggcctgatgtctggatccgccctcgcgactccgttgtcttggaggcaaaggca
gcgagcataggtagctcggatcagttctcgctcggtttcacgcttcggttcccccgtttc
cgccgcttgcgatccgacaagaattgggacgagggactcagcgtgcaggagttcctggat
ctccgcaagcgggtcgaggaagaagccaaggagaagacgatgagtgtcgagaaccgcaaa
cgaaagtcagtgaagcgcgccaagcgcgaggtggtgattgctgggacggagaacatgcct
gcgcaattcgaggggcagaagtcgaagctctttgacggtctcgagttctgcgtcttgtcg
gaatcgctcagaccattcaagaagaccaaggctcagcttgagacgctgatcaaggagaac
ggtggacgtgtctctcagcgagcgataccccggtcggagatgatcctggtggccgacaaa
aacgtcatcaaagtcgccagcttggttaaagaggggcaaaaagagggtggagtcgacatc
atcaagccgaagtggatacaggactgcctcgagcaagctgatgaatccttcttgcttccg
tacgaggatcgacacctacagcatgcaacagaagcgctgaaaacagttgctctgcaaaac
acggacatgtatggcgacagttacgccaggaatatcggtctcgacgagctccgggcaatc
ttcaagagcatgcccaaacgagagcctgacacggaacctttcgataagtcccagttcctg
aatcagctggaagagcgcggccatggaattggtcagctcaaggggttgattttccgtcgg
tgtactgtgcacttacacgaggcaaatgaagagggagagagagacgacatcaacatgctc
aagtatatgaattatctcacgttcggcggtgcacgattggcgagcggcgccgacgacgaa
ggggccacacacattgtgcttatagggacaggcgatggttgcaaggaggccgccgaggac
ttgcgccgggaaactagcagccggcggaagatcccacacatcgtcaccaggcattgggtc
gaagactgttggcgcgagaagacgttgctggatgaggagaggtacagacgcatatga
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