Colletotrichum higginsianum: CH63R_06700
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Entry
CH63R_06700 CDS
T08176
Name
(RefSeq) transcription factor tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
chig
Colletotrichum higginsianum
Pathway
chig03022
Basal transcription factors
chig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CH63R_06700
09124 Replication and repair
03420 Nucleotide excision repair
CH63R_06700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_06700
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_06700
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CH63R_06700
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CH63R_06700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
28865782
NCBI-ProteinID:
XP_018159525
UniProt:
A0A1B7YGR8
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All DBs
Position
4:complement(4589920..4591579)
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AA seq
497 aa
AA seq
DB search
MSVSSGQSLQLADYLEKLPGTTFRKLYLQPSTAFAIFRRMIPPLAKTIVMAILYMPKPML
LEDLDVWVKPESRRQKDQAISTLRSLHILQITVPSKERPQEMQLTTNFKSSLRLALEGGG
THNSFGVPSSLPVPPEITVPFLDRYARRKWEDILHYIVNTVNPGGADLGGPKSSVKNLLV
AGQLVRRQGSAVGITQAGFTFLLQEANAQVWTLLLLWLEATDHAEDAAGMESTDMLSFLF
LLASLELGRAYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYFPTRLATTLTSSSSALR
SAGAGFSAALAAATGPRPSPSNGLTPGGSEEGKGGGSIIVETNYRVYAYGQTPLQIAVLS
LFCKLKLRFADMVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRSRPVLP
PTVVDQIRLWQLETERMTTTSGFLFRDFDSPKEYEVIAGYASEIGVLVWRNDKLGMFFAS
KHEQIRDYLKLRKKAED
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcagctcgggtcagtcgctccagctggccgactacctggagaagctgccgggt
acgacgttcaggaaactctacctgcagccctcgacggcctttgccatcttccgaagaatg
attccgccgttggcaaaaaccattgtcatggccattctctacatgccgaagcccatgttg
ttggaagatttggacgtctgggtcaagccggagtcgcgaaggcagaaagaccaggccatc
tcgacgctccgcagcctccacatcctccagatcacggtcccttcgaaggaacgccctcaa
gagatgcaactcacgacgaacttcaagagctcgctgcgccttgccctcgagggcggcggc
actcacaactcgttcggcgtgccctcttccctccccgtcccgcccgagatcacggtcccc
tttctcgaccgttacgcccgccgcaagtgggaggatatcctgcactatatcgtcaacacg
gttaaccccggcggcgccgacctgggcggacctaagtcgtccgttaagaacctgctcgtc
gccggccagctcgtccgccgccaggggtccgccgtcggcatcacccaagcaggctttacc
ttcctcctgcaggaggctaacgcccaggtctggaccctgctgctgctgtggctcgaggcc
accgaccacgctgaggacgccgccgggatggagagcaccgatatgctgagcttcctcttt
ctcctcgccagccttgagctcggcagggcctacgacacaaacgccctcaccgaggcgcgc
cgcaacatgcttcccagtctgctcgactttggtctgatctatatcccctcacacaagccc
cagcagtatttcccaacccgcctcgcgacgacactcacgagcagctctagcgcccttcgc
agcgccggcgccggcttctccgccgctctcgccgctgcgaccggcccgcggccctctccc
tccaacggcctcacgccgggcggcagcgaggagggcaagggcggcggcagcatcatcgtc
gagacgaactacagagtctacgcctacggccagactcccttgcagatcgccgtgctctcg
ctcttctgcaagctcaagctgcgcttcgccgacatggtgtcgggccggctgacgcgcaac
tcgatccgcaacgccgtcgagcgcggcattacggccgaccagatcatctcgtacctcgcc
gcgcacgcgcatgagcagatgcaccgcatggccgccgtgcgcagcaggcccgtgttgccg
cccaccgtcgtcgaccagatccggttgtggcagctcgagactgagcgcatgacgacgacg
agtggcttccttttccgcgactttgacagccccaaggagtacgaggtcatcgccggctac
gcctctgagatcggcgtgctcgtgtggcgcaacgacaagctcggcatgttctttgcgagc
aagcacgagcagattagggactatctcaagttgaggaagaaggccgaggactag
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