Colletotrichum higginsianum: CH63R_09111 Help Entry CH63R_09111       CDS       T08176                                  Name (RefSeq) RNA helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism chig  Colletotrichum higginsianum Pathway chig03013   Nucleocytoplasmic transport chig03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:chig00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CH63R_09111    03015 mRNA surveillance pathway     CH63R_09111  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:chig03019]     CH63R_09111 Enzymes [BR:chig01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CH63R_09111     5.6.2.5  RNA 5'-3' helicase      CH63R_09111 Messenger RNA biogenesis [BR:chig03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CH63R_09111    mRNA cycle factors     Common to processing body (P body) and stress granule      CH63R_09111 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD UvrD-helicase Helicase_RecD Viral_helicase1 SLFN-g3_helicase PIF1 AAA_22 nSTAND3 AAA_16 SRP54 ATPase PhoH AAA_5 Motif Other DBs NCBI-GeneID:  28868192 NCBI-ProteinID:  XP_018156108 UniProt:  A0A1B7Y6C4 LinkDB All DBs Position 6:complement(2362531..2365854) Genome browser AA seq 1086 aa AA seqDB search MEGAFNHLGNHLLSDSAAAIKAGADDFTGIEPDDSFLYGKFGGRGGRRRADDDDNQTELY DDEDNDSLTSMPVGALKDLSLGRPQEEDRELPPHACAYCGIHSPSSVVKCLGCNKWFCSA RGNATSSHIVNHLVRARHKEVQLHPESTLGDTVLECYNCGTKNVFLLGFIPAKSDTVVVL LCRQPCAANTSSKDMSWDTSRWQPLIEERAFLTWLVATPSDAEQLRARHLTPPMIAKLEE MWKENATATVADLEKAASIDDDPHPVLLKYDDPYHYQNIFGPLVKMESDYDKKLKEAQSE DGLTVRWDYGLNNKHLVSFELHKIESGDVKLAVGDEMRLRYKGELRPAWEGVGYVIKIPN NQSDEVTLELRKAGNEKQVPTECTHNFSADYVWKATSYDRMQYAMKTFAVDDMSVSGYIF HKLLGHDVAVAPMKTTMPKKFSVPGLPDLNTSQIAAIKAVLSTPLSLIQGPPGTGKTVTS ATIIYHLCKMNNGQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALH EQVRMNDSNGELVKLAQLKSELGELSSQDEKKFKQLTKAAERDILHNADVVCCTCVGAGD PRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQ SLFERLVNLRLVPIRLNIQYRMHPCLSEFPSNMFYDGSLQNGVTVKDRVRRDVDFPWPVV DMPMMFWSNLGNEEISASGTSYLNRTEASNVEKVVTRFFKAGVKPLDIGVITPYEGQRSY IVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVA LTRAKYGLVIIGNPKVLSKHELWHHLLVHFKDRKCLVEGPLTNLQTSLLQFGKPRTAYRQ KMSQPPQFNAGGPPNGGNRFNGAGSTRDFDSGSLMSYIPDDVSSIHSSLGGAGLNTTYPP IFSSFTPDQWPGLPGVPGTGRSGNKRGGRGTESIAGESVANSEYTDASASVIGAKGVGQG GVSLGAGLQDAIHGMRPASYSHSDRLKHYVESGGRMGAGNGFGRRYDDDEKSVSTAFHSQ IGGGFD NT seq 3261 nt NT seq  +upstreamnt  +downstreamnt atggagggagcgttcaaccacctggggaaccacctcctaagtgactcggcagccgcgatc aaggccggcgccgacgattttaccggcatcgaacccgacgacagtttcctctacggcaag ttcggcggtcgtggtggccgccgccgcgccgatgacgatgacaaccaaacggagctctac gacgatgaagacaacgatagcttgacgagcatgcccgttggggccctgaaggatttgagc ctcggaagaccccaggaggaagatagggagcttcctccccacgcttgcgcgtattgtggg attcattccccgagttccgtcgtcaagtgccttggctgcaacaaatggttttgtagtgcc cgcggcaatgcgacttcttcccacattgtcaaccatttggtgagagctcgacacaaagag gttcagcttcaccccgaatccaccctaggtgataccgtgctggagtgctacaactgcgga actaagaacgtttttcttctcggcttcatccctgccaagtcggataccgtcgttgtgctc ttgtgccgtcagccatgtgccgcgaacacttcttccaaggatatgagctgggacacttct cgatggcaacccctgattgaggagcgagcttttctgacctggctcgttgccactccgtcc gatgctgagcagcttcgagctcggcacctgacaccgcccatgatcgcgaagttggaggag atgtggaaggagaacgcgaccgcgactgttgcggacctcgaaaaggctgctagcatcgat gacgacccgcaccccgtcttgctcaagtacgacgacccctatcactaccagaacatcttt ggccctctggtcaagatggagtccgactacgacaagaagctcaaggaggcgcagtccgag gacggtctcaccgttcgctgggattacggactcaacaacaagcatctggtcagcttcgaa ctgcataagatagagtctggtgacgtcaaactggctgttggcgatgagatgcggctccgc tacaagggcgagctccgtccggcctgggagggagtcggctatgtcatcaagatccccaac aaccagtctgacgaagtcactctcgagctgcgtaaggccggcaacgagaagcaagtcccc actgagtgtacccacaacttctcggcagactacgtgtggaaggcgacgtcgtatgaccgc atgcagtatgcgatgaagacattcgccgtggacgacatgagtgtctcgggatacatcttc cacaagctgctgggtcatgatgtcgcggttgcgccgatgaagacgaccatgcctaagaag ttcagcgttcctggcctccccgacctcaacacgagccagatcgccgccatcaaggccgta ctgtcgaccccgctcagcttgatccagggccctccgggtaccggcaagactgtgacttcg gcaaccattatttaccacctgtgcaagatgaacaatggacaagtccttgtttgtgcccca tccaacgtcgccgtcgaccagctctgcgagcgcattcaccgcactggtctcaaggtcgtt cgtctcacagccaaatcccgcgaggatgtcgagtcgtccgtaagcttccttgcgctccat gagcaggtccgtatgaacgacagcaacggagagctagtcaagcttgcacagctcaagagt gagcttggcgagctatccagccaggacgagaagaagttcaagcagctcaccaaggcggcc gagagagacatccttcacaacgccgacgttgtctgctgcacttgtgttggcgctggtgat cctcgcctgtccaagatgaagtttcgcaacgtcctcatcgatgagtcgacccaatccgcc gagcctgagtgcatgattcctcttgtccttgggtgtaagcaggttgtccttgtcggcgat cacaagcaactgggccctgtcatcatgaacaagaaggccgcgaaggcaggtctcaaccag tctcttttcgagcgtctcgtcaacctgcgattggtgcctattcgcctgaacatacagtac cgcatgcacccatgtctatcggagttcccttccaacatgttctacgacgggtctctccag aacggcgtcacggtcaaggatcgcgtccgccgcgatgtggacttcccttggcctgtcgtt gacatgccgatgatgttctggtccaacttgggcaatgaggaaatctcggcttccggaacg tcgtacctgaaccgcactgaggcgtccaacgtggagaaggttgtcactcgcttcttcaag gcgggagtcaagcctctggacatcggcgtcatcactccgtacgagggacagcgaagctac atcgtgagcaccatgcagaacacgggcacattcaagaaggagagctacaaggaggtcgag gttgcttctgtcgatgccttccagggtcgtgagaaggactttatcgttctgtcttgcgtc cgttccaacgacaaccaaggcatcggcttcctttcggacccgcgccgcctcaacgtcgcc ctgacccgtgctaagtacggccttgtcatcatcggtaaccccaaggtcctttccaagcat gagctgtggcaccacttgcttgtccatttcaaggaccgcaagtgcttggtcgagggacct ttgaccaacctgcagacttcgctattgcagtttggaaagccgagaaccgcttaccgccaa aagatgagccagccccctcagttcaacgcaggcggcccccccaacggcggcaaccgcttc aacggcgctggctcgacgcgcgactttgattcgggctcgttgatgtcgtacatccctgac gatgtttcgtccatccacagctccctgggtggcgccggcctgaacaccacttaccctcct atcttttcgagcttcacgcccgatcagtggccgggtctgccgggtgttcctggtacggga cggtccggcaacaagagagggggtcgtggcactgagagcattgcgggcgagagtgttgcc aactcggaatacacggacgccagcgccagcgtcatcggcgccaagggtgttggtcagggt ggtgtcagcttgggcgccggtcttcaagatgccatccacggcatgcgcccggcgtcatac agtcacagcgatcggttgaagcactacgtcgaaagcggcggtcgcatgggagccggcaac ggcttcggccggcggtacgacgacgacgagaagagcgtcagcaccgcgttccacagccag attggtggcggatttgactga

DBGET integrated database retrieval system