Colletotrichum higginsianum: CH63R_12652
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Entry
CH63R_12652 CDS
T08176
Name
(RefSeq) Rpb7-binding protein seb1
KO
K15560
protein NRD1
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_12652
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CH63R_12652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrd1-Seb1_dom2
CID
RRM_1
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
28871733
NCBI-ProteinID:
XP_018152043
UniProt:
A0A1B7XUT8
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All DBs
Position
9:1334337..1337243
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AA seq
788 aa
AA seq
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MATAAPVVELEAALKAVSDYKAPGVTGTRIAAMTSICVQNVQYESVLIQKLFTYLKMATP
PYKLGILYVVDSVIRKWREQALFHKQTTDENAADGTFGAGVYRLTTLMPSLINDVLRILP
DGYKDKLNKLLEIWHKGGTFPPEMIESFQYKLDITLVPAPILSYTPEGSPSPDLVERMGY
NRPVAAPSAPTQMSAPEATDILAKLQKLAKASQEQSLNSIQNQTHGRPHDGGHNQTYGQP
QHDGQNRHNSQGHDNGQPHNLAQPQIPVQAQSNSQVPSPLQELLSKISTFGQSQPQPQPQ
PQPSAPSINSQQSSYSMAPLSGGISAALAPAPAPLPFPQLQPQPSGMQFPGLPQMSQMPQ
MPQLPQIPQWPQMPQMPQIPQTTQPLAGIPPTAVDQMTMFQTLLNQGITAEHLAAMVAAV
NGGQSGAAPVAPPVSVAPTVTAAQNYYTSGQGYGGSAQLYGNSDHHRYNDRARSPDRRQG
RSRSRSPGRHWDQRGSSRDPRENGADYSRRSPDRGRHNSRDSRRGSDYRQRSPPPSRDGG
RSNSSRHGSSDKWIDYDQSLPEGHIKVLSRTLFVGGLNGMPEPQIRDIFSRYGQVQTVII
NKEGRHAFVKMTNRPDAARAKAAMEKLAEQRRRGGTPPLRVRWGVGYGPRDACNYGKGVS
VILIDVLTDADRKWMFTAEYGGTGGKPLTSGMVVEEPDIEIGAGVSSKAISKHMKTDKSG
NNGPRSTRSGRAASRDDPGHWHSGRNDAKVSGANAQPLPQQFPFGIGTLPNGMPAYPPGF
AFPASKGN
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgctgcccctgtcgtggagcttgaagctgctctcaaggcagtctcagactac
aaggctcctggcgttacaggcactcgcattgctgctatgaccagcatctgtgttcaaaac
gttcagtatgagtcggtcctcattcagaagttgttcacctacctcaagatggcaacccct
ccctacaagctcggcattctttatgttgtcgactcggtgatccgcaagtggcgtgaacag
gctctgtttcataagcagacaaccgacgagaacgctgcagatggcacttttggtgctggt
gtgtaccgactgactacgcttatgcctagcctcattaatgatgtgcttcgaattttgcct
gatggctacaaggacaaactgaataagttactggagatctggcacaaaggcggcactttc
ccacctgagatgatagagtcattccagtacaagctggacattacgcttgttcctgctccg
atcctgtcctacacgccggagggtagcccctccccagacctggtcgagcgaatgggctac
aacagaccagtggctgcgccctctgcccctacccagatgtctgcgccagaagccaccgac
atcctggccaaactccagaagctcgcgaaagcctcgcaagagcagagcctgaacagcatc
cagaatcaaactcatggacggcctcatgatggcggccacaaccagacttatgggcagcct
cagcatgacggtcagaatcgccacaacagccagggtcatgacaacggccaaccccataat
cttgcccagccccagattcctgtccaggcccagagcaactctcaggtgccgtctcccctg
caggagctgctctccaaaatctcgactttcggtcagtcgcagccgcagccgcagccgcag
ccgcagccgtcggccccttccataaactctcagcagtcctcttactctatggctcccttg
tctggcggcatttctgctgcactagctccggctccggctccattgcccttcccccagctt
cagcctcaacctagtggcatgcagtttccgggccttcctcagatgtctcaaatgcctcag
atgcctcagttgccgcagatccctcaatggccgcagatgccacagatgccgcagatcccc
cagactacccagcccctcgctggtatccctcccaccgccgtcgatcaaatgacgatgttt
cagacgcttctcaaccagggtatcaccgccgaacacttggccgccatggtcgccgccgtc
aacggcggtcagagcggtgctgctcccgttgcgcctcctgtttctgtggccccaaccgtg
accgctgcgcagaactactacacctcgggacagggatatggcggctctgctcagctctac
ggcaactctgaccaccatcggtacaatgaccgcgcgcgatccccggaccggcgccagggt
cgctctcgttcgagatcgcccggccgccactgggaccagcgcggatcgtcgcgagacccc
cgtgaaaatggcgctgactatagtcgtcgctctcccgacagaggccgtcacaatagtaga
gacagccgccgaggcagcgactaccgtcaacgtagtccgcctccgagccgagatggcggc
cgcagcaacagttctcgtcacggttcgagcgataagtggatcgactatgatcaatctctc
cctgagggccacatcaaggttcttagcagaaccctcttcgtcggaggtctcaatggtatg
ccagagcctcagattcgcgacatcttcagccgttacggccaagttcagacggtcatcatt
aacaaagagggacgtcatgccttcgtgaagatgacaaaccgccccgacgctgcccgtgcc
aaggcggccatggagaaactggctgaacagcgaagacgtggtggtaccccgccgctccga
gtgagatggggcgtgggctatggtcctcgtgatgcttgcaactatggcaaaggggtcagc
gtcatcctgatcgatgtgctcaccgacgcagaccgcaagtggatgttcaccgctgagtat
ggcggcactggcggcaagcccctcacgtcgggcatggtggtcgaggagcctgacatcgag
attggcgctggtgtgtcttccaaggccatcagcaagcacatgaagacggacaagagcggt
aacaacggtcctcgttctacccgtagcggacgcgctgccagccgtgatgatcctggccac
tggcacagcggccgcaatgatgctaaagtctctggcgccaacgcccagccgcttccccag
cagttcccattcggtattggtaccttgcccaacggcatgcctgcgtaccctcctggcttc
gcgttccccgcctccaagggcaactaa
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