Colletotrichum higginsianum: CH63R_12869
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Entry
CH63R_12869 CDS
T08176
Name
(RefSeq) Tfiih basal transcription factor complex p47 subunit
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
chig
Colletotrichum higginsianum
Pathway
chig03022
Basal transcription factors
chig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CH63R_12869
09124 Replication and repair
03420 Nucleotide excision repair
CH63R_12869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_12869
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_12869
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CH63R_12869
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CH63R_12869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
28871950
NCBI-ProteinID:
XP_018152260
UniProt:
H1VLR5
LinkDB
All DBs
Position
9:complement(2160967..2162463)
Genome browser
AA seq
480 aa
AA seq
DB search
MADSDGEYHGLSDDDLQVTNGRGADSSKGRGKKGKGGHTKARWEDVKRSWEEVTEGADGS
LAVGASLEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMTEKDMLPNRYRVAWAYAADF
VKEYFEQNPISQLAIIGMRDGVAIRISDMSGNPTDHLEKLKTFEGQDPSGNPSLQNALEM
CRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTITSLIADRIRVSIVGLAAQVAICAEL
CSRTNAGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQSTASLLMMGFPSRTLAQGEAT
AVCACHNKPAREGYLCTRCGTRVCRLPIECPACSLTLILSTHLARSYHHLFPLRNWVEVL
WAEATKSKACYSCLTTFPEPPKASRKKDKDKDSDGVPTTTPVAPTPVIASELKGVSESGR
YGCTVCGNHFCIDCDVYAHEVIHNCPGCQSDTRGAPMEVVTETNGTNTHQTNGTAMVLDS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccgacggcgagtaccatgggctgtccgatgacgacctccaagtaaccaac
ggcaggggcgcagacagcagcaagggtcgcggcaagaagggaaagggtggccacacaaag
gcgcgatgggaggacgtcaaacgaagctgggaagaagtcacagaaggcgcggacggaagt
ctggcggtcggcgcgagcctcgaggccgagaagaggcggagactgctccgggacacgacg
ccgctgcagcgtggcatcatcagacatctggtcctggtgctggatatgtctttcgccatg
acagaaaaggacatgctgccgaaccgctatcgcgtcgcctgggcgtacgccgccgacttt
gtcaaggaatactttgagcagaaccccatctcgcagctggccataattggcatgcgggac
ggcgtcgcgatccggatcagcgacatgagcggcaacccgaccgatcacctggagaagctc
aagacattcgagggacaagatccgtcaggcaacccaagtctgcagaatgcgctcgagatg
tgccgcggcgcgctattccacgcaccttcccacggcacgcgcgaagtgctcatcgtattc
ggcgctctcctatcctccgatccgggcgacattcacgacacaataacttccctcatcgcc
gaccgaattcgcgtatccatcgtaggcctcgcagcacaggtcgccatctgcgctgagcta
tgctcccgcaccaacgccggcgacgacacgcagtacagcgtgtgcatgaacgatgcccac
ttccgagacctcctccttgccgcaacgacgccgcccgtcacgcggaccgccgcccagagc
accgcctcgctgctcatgatgggcttcccctcgcgcaccctcgcgcagggcgaggctacc
gccgtgtgcgcctgtcacaacaagcctgcccgcgagggttacctctgcacgcgttgtggc
acgcgcgtatgtcgcttgcccatcgagtgtcccgcctgcagcctgaccctcatcttgtcg
acgcatctagcacgctcgtaccaccacctcttcccgctgaggaattgggtcgaagtgctc
tgggccgaagccactaaatcaaaagcctgctactcgtgtctgacaacgtttcccgaacca
ccaaaggcgagcaggaaaaaggacaaggacaaggatagcgacggggtgcccacaacgaca
ccagtggcgccgacgccagtgatcgcgtcggagctcaagggcgtcagcgagagcggacgg
tatggctgcacggtgtgtggcaaccacttctgtattgactgtgatgtttacgcacatgag
gtcattcacaactgtcctgggtgccagagtgacacccgcggggcgccgatggaggtggtg
acggagacaaacgggacaaacacgcaccagacgaacgggacggcaatggtgttggattcg
tga
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