KEGG   Chitinophaga agri: GWR21_20550
Entry
GWR21_20550       CDS       T06416                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
chih  Chitinophaga agri
Pathway
chih03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:chih00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GWR21_20550 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chih03400]
    GWR21_20550 (ligD)
Enzymes [BR:chih01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GWR21_20550 (ligD)
DNA repair and recombination proteins [BR:chih03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GWR21_20550 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QHS61906
UniProt: A0A6B9ZIL9
LinkDB
Position
5163977..5166544
AA seq 855 aa
MSSLRTYDQKRNFKETAEPKGGKRKSGGKEHIFVIQRHHASRLHYDFRLEVDGVLKSWAV
PKGPSMNPSDKRLAMQVEDHPYDYKDFEGVIPEGNYGAGFVYVWDKGSYELLHGDGASFD
KEAGKEIREGNLKIRLKGRKVKGEFALVRMKNSDDNAWLLLKHKDDYAVKGTYDSENYTP
QRIKDRGVKEKEKMKTGTKKKAAPAKEKAKTATRAKTKRELFTPMMATLVDAPFNRDGWL
FETKWDGYRAIADVSKGKVELYSRNHLSFNKDYAPVVTALEKLKHNAVLDGEIVILKKDG
TSDFQALQNYKNDASGNLVYVVFDMLELDGQDLTAMPLIQRKELLKEVIKQLKSKTVVYS
DHVLDTSDKLYNEAKQKGWEGIIAKEAESLYAEGKRTLSWLKIKIIGEQEAIICGYTEPK
GSRKKIGSLVLGVYDDKKNLRYVGNCGGGLDGTLINELYEKMQPLIQKSSPFDEKVRTNT
PVTWVKPTLVCQVKFSSWTSDKHLRQPVFLGLRKDKPATEVQKETPKSAKMATKKAATTA
PAKAGREDESTVALNGKKVPLTNQNKLYWPDEKITKGELVDYYITMADYVLPYLKDRPLS
LHRFPNGIKDAGFYQKDMDTASAPDWLKTVSLHAASASRDVDYLVCNNAATLVYMANLGC
IEMNPWLSRVKKLDNPDYIVLDLDPENIAFKYVVETALAIKSLLDQLGVTAFCKTSGASG
IHIYVPTGGKYNYETCRLFAEYVAKQVQQELPQTTSVIRTKSKRNKKVYIDYMQNSRGQT
VASPYSVRPKPGATVSAPLQWDELTDDLAISNFTIYNMADRLKEIGDLWKDIDKTKNDLR
KAISKIEDLAQADVE
NT seq 2568 nt   +upstreamnt  +downstreamnt
atgagtagcctgagaacatacgaccagaaacgcaatttcaaggaaactgcggagcccaaa
ggcgggaaaagaaagagtggtggcaaggagcatatcttcgttatacaacggcatcatgct
tcacgcctgcattatgacttccgtctggaagtagatggcgtactgaaaagctgggcagtg
ccgaaagggccttccatgaatccttcagataaaagactggccatgcaggtggaagatcat
ccatacgattacaaagacttcgaaggtgtcattccagaagggaactatggagctggtttt
gtctatgtctgggataagggaagctatgaacttttgcatggtgatggtgccagcttcgac
aaggaagccggtaaagagatcagggaaggtaacctgaaaattcgcctgaaaggccggaag
gtaaagggggagttcgccctagtcagaatgaaaaactcagatgataatgcctggctgctg
ctgaaacacaaagacgattacgcggtaaaaggtacttacgatagtgagaattataccccg
cagcgcatcaaagacagaggtgtgaaagaaaaggagaagatgaagacaggtactaagaaa
aaggcggcgccagcaaaagagaaagcaaagacagccaccagggctaagacgaagcgcgaa
ctgttcacacccatgatggcaaccctggtagatgcccctttcaacagggatggctggttg
tttgaaacaaaatgggacggatacagggctattgcagacgtgagcaagggcaaggtagaa
ctgtattccaggaaccatctttctttcaataaagattatgcaccggttgtgacagcattg
gaaaaactgaagcataatgctgtgttggatggggaaatagtcattctgaaaaaggatggt
acatcggattttcaggcattgcaaaactataagaatgacgcctcaggtaacctggtctat
gtagtgtttgatatgttggagctggacggacaggacctgacagccatgccattgatccag
cgaaaggaactgctgaaagaggtgattaaacagctcaaaagcaaaactgtggtctattca
gaccatgtactggataccagtgacaagctgtataatgaagcaaagcagaaaggctgggaa
ggcattatagcgaaggaagcagagagtttatatgcggaagggaaacgtacactttcctgg
ctgaaaataaagatcattggtgaacaggaggctattatctgcggatataccgagccaaaa
ggaagcaggaaaaagataggctccctcgtgctgggtgtgtatgacgataagaaaaacctc
aggtatgtgggtaattgtggtggtggtttagacggaacgctgatcaatgaactgtatgag
aagatgcagccactcatccaaaaatcatctccctttgatgaaaaggtgagaacgaatacg
cctgtgacctgggtaaagccgacgttggtatgtcaggtgaaattctcttcctggacaagc
gacaaacatctgcgtcagccggtattcctggggctcaggaaagataaaccagccactgaa
gtacagaaggaaactcctaaatcagctaagatggcaacaaagaaagctgctacaacggcc
ccggctaaagctggtcgtgaggatgaaagcactgtggcattgaatggtaagaaggttcca
ctgaccaaccagaataagctgtactggccggatgaaaagataacaaaaggggagttggtg
gattactatatcacaatggcagactacgtattgccgtatctgaaagatcgccctctgagc
ctgcaccgcttcccgaatggcattaaagatgccggattttatcagaaagatatggatacc
gcatctgctcctgactggctgaaaacggtatcgttacatgctgcttctgcctcccgtgat
gtagattacctggtgtgtaataatgctgcgacactggtgtatatggctaatcttggttgt
attgaaatgaatccatggttatcccgtgtgaagaagctggataatccggattatatcgta
ctggaccttgaccctgagaatatcgcctttaaatatgtagtggagacggcattggctatc
aagtccctgctggatcaactcggggtgactgcattctgtaagacatcaggggcttctggt
atacatatttatgtgccgacaggagggaagtataattatgaaacctgccggttatttgcc
gagtatgtagccaaacaggtacagcaggaattgccccaaacaaccagtgtgatccgcaca
aagtcgaagcgtaacaagaaagtgtatatcgattatatgcagaatagtcgtggacaaact
gtggcctctccttattctgtaaggcctaaaccaggagcaacggtatcggccccgctacaa
tgggatgagcttacagacgatcttgcgatcagcaattttacgatatataatatggctgac
aggttgaaggagatcggtgacctgtggaaggatatcgataaaacaaagaatgatctgcgt
aaagcgatcagtaagatagaagatctggcacaggcggatgtggaataa

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