Chitinophaga agri: GWR21_20550
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Entry
GWR21_20550 CDS
T06416
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chih
Chitinophaga agri
Pathway
chih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GWR21_20550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chih03400
]
GWR21_20550 (ligD)
Enzymes [BR:
chih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GWR21_20550 (ligD)
DNA repair and recombination proteins [BR:
chih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GWR21_20550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QHS61906
UniProt:
A0A6B9ZIL9
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All DBs
Position
5163977..5166544
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AA seq
855 aa
AA seq
DB search
MSSLRTYDQKRNFKETAEPKGGKRKSGGKEHIFVIQRHHASRLHYDFRLEVDGVLKSWAV
PKGPSMNPSDKRLAMQVEDHPYDYKDFEGVIPEGNYGAGFVYVWDKGSYELLHGDGASFD
KEAGKEIREGNLKIRLKGRKVKGEFALVRMKNSDDNAWLLLKHKDDYAVKGTYDSENYTP
QRIKDRGVKEKEKMKTGTKKKAAPAKEKAKTATRAKTKRELFTPMMATLVDAPFNRDGWL
FETKWDGYRAIADVSKGKVELYSRNHLSFNKDYAPVVTALEKLKHNAVLDGEIVILKKDG
TSDFQALQNYKNDASGNLVYVVFDMLELDGQDLTAMPLIQRKELLKEVIKQLKSKTVVYS
DHVLDTSDKLYNEAKQKGWEGIIAKEAESLYAEGKRTLSWLKIKIIGEQEAIICGYTEPK
GSRKKIGSLVLGVYDDKKNLRYVGNCGGGLDGTLINELYEKMQPLIQKSSPFDEKVRTNT
PVTWVKPTLVCQVKFSSWTSDKHLRQPVFLGLRKDKPATEVQKETPKSAKMATKKAATTA
PAKAGREDESTVALNGKKVPLTNQNKLYWPDEKITKGELVDYYITMADYVLPYLKDRPLS
LHRFPNGIKDAGFYQKDMDTASAPDWLKTVSLHAASASRDVDYLVCNNAATLVYMANLGC
IEMNPWLSRVKKLDNPDYIVLDLDPENIAFKYVVETALAIKSLLDQLGVTAFCKTSGASG
IHIYVPTGGKYNYETCRLFAEYVAKQVQQELPQTTSVIRTKSKRNKKVYIDYMQNSRGQT
VASPYSVRPKPGATVSAPLQWDELTDDLAISNFTIYNMADRLKEIGDLWKDIDKTKNDLR
KAISKIEDLAQADVE
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcctgagaacatacgaccagaaacgcaatttcaaggaaactgcggagcccaaa
ggcgggaaaagaaagagtggtggcaaggagcatatcttcgttatacaacggcatcatgct
tcacgcctgcattatgacttccgtctggaagtagatggcgtactgaaaagctgggcagtg
ccgaaagggccttccatgaatccttcagataaaagactggccatgcaggtggaagatcat
ccatacgattacaaagacttcgaaggtgtcattccagaagggaactatggagctggtttt
gtctatgtctgggataagggaagctatgaacttttgcatggtgatggtgccagcttcgac
aaggaagccggtaaagagatcagggaaggtaacctgaaaattcgcctgaaaggccggaag
gtaaagggggagttcgccctagtcagaatgaaaaactcagatgataatgcctggctgctg
ctgaaacacaaagacgattacgcggtaaaaggtacttacgatagtgagaattataccccg
cagcgcatcaaagacagaggtgtgaaagaaaaggagaagatgaagacaggtactaagaaa
aaggcggcgccagcaaaagagaaagcaaagacagccaccagggctaagacgaagcgcgaa
ctgttcacacccatgatggcaaccctggtagatgcccctttcaacagggatggctggttg
tttgaaacaaaatgggacggatacagggctattgcagacgtgagcaagggcaaggtagaa
ctgtattccaggaaccatctttctttcaataaagattatgcaccggttgtgacagcattg
gaaaaactgaagcataatgctgtgttggatggggaaatagtcattctgaaaaaggatggt
acatcggattttcaggcattgcaaaactataagaatgacgcctcaggtaacctggtctat
gtagtgtttgatatgttggagctggacggacaggacctgacagccatgccattgatccag
cgaaaggaactgctgaaagaggtgattaaacagctcaaaagcaaaactgtggtctattca
gaccatgtactggataccagtgacaagctgtataatgaagcaaagcagaaaggctgggaa
ggcattatagcgaaggaagcagagagtttatatgcggaagggaaacgtacactttcctgg
ctgaaaataaagatcattggtgaacaggaggctattatctgcggatataccgagccaaaa
ggaagcaggaaaaagataggctccctcgtgctgggtgtgtatgacgataagaaaaacctc
aggtatgtgggtaattgtggtggtggtttagacggaacgctgatcaatgaactgtatgag
aagatgcagccactcatccaaaaatcatctccctttgatgaaaaggtgagaacgaatacg
cctgtgacctgggtaaagccgacgttggtatgtcaggtgaaattctcttcctggacaagc
gacaaacatctgcgtcagccggtattcctggggctcaggaaagataaaccagccactgaa
gtacagaaggaaactcctaaatcagctaagatggcaacaaagaaagctgctacaacggcc
ccggctaaagctggtcgtgaggatgaaagcactgtggcattgaatggtaagaaggttcca
ctgaccaaccagaataagctgtactggccggatgaaaagataacaaaaggggagttggtg
gattactatatcacaatggcagactacgtattgccgtatctgaaagatcgccctctgagc
ctgcaccgcttcccgaatggcattaaagatgccggattttatcagaaagatatggatacc
gcatctgctcctgactggctgaaaacggtatcgttacatgctgcttctgcctcccgtgat
gtagattacctggtgtgtaataatgctgcgacactggtgtatatggctaatcttggttgt
attgaaatgaatccatggttatcccgtgtgaagaagctggataatccggattatatcgta
ctggaccttgaccctgagaatatcgcctttaaatatgtagtggagacggcattggctatc
aagtccctgctggatcaactcggggtgactgcattctgtaagacatcaggggcttctggt
atacatatttatgtgccgacaggagggaagtataattatgaaacctgccggttatttgcc
gagtatgtagccaaacaggtacagcaggaattgccccaaacaaccagtgtgatccgcaca
aagtcgaagcgtaacaagaaagtgtatatcgattatatgcagaatagtcgtggacaaact
gtggcctctccttattctgtaaggcctaaaccaggagcaacggtatcggccccgctacaa
tgggatgagcttacagacgatcttgcgatcagcaattttacgatatataatatggctgac
aggttgaaggagatcggtgacctgtggaaggatatcgataaaacaaagaatgatctgcgt
aaagcgatcagtaagatagaagatctggcacaggcggatgtggaataa
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