Chitinophaga agri: GWR21_29825
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Entry
GWR21_29825 CDS
T06416
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chih
Chitinophaga agri
Pathway
chih02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GWR21_29825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chih03021
]
GWR21_29825
Transcription machinery [BR:
chih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GWR21_29825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
HTH_40
HTH_16
Sua5_C
Motif
Other DBs
NCBI-ProteinID:
QHS63628
UniProt:
A0A6B9ZMY5
LinkDB
All DBs
Position
complement(7574192..7574812)
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AA seq
206 aa
AA seq
DB search
MTQREHLPFQRVLPDNENNLVRAAAAGDRDAYGQLYTHYYPFLQVAITFITQDRDETDEL
LQETFLRIWKTREKLLLVKSFENYAFRIARNLLFDQLRRKKVHLKAIDTIAQRAATEATS
GEGPLVYKELHDLAIRAINELDPKKRDIFLSRTEEGLSFEEIADKYDMAVVTVKKHYYAA
FHALKSILEQHGGMVSLLFLLWLRGK
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcaaagggaacatctaccatttcaacgcgtactaccggacaatgaaaataattta
gtacgagcagccgcagcaggcgaccgggatgcttatggacagttatatacacactactac
cctttcttacaggtagccatcacatttattacgcaggaccgggacgaaaccgacgaactg
ttacaggaaactttcctccggatctggaagacccgtgagaagctgttactggtgaaatcg
ttcgagaactatgcattcaggattgccagaaatctgttatttgatcagctcaggcggaag
aaagtccatctgaaagccattgacaccatcgctcagcgtgccgctacggaagcaaccagc
ggcgaaggaccgttagtctataaagaactgcatgacctggccatccgggccatcaatgaa
ctggacccgaagaaaagggacatcttcctgtcaaggacagaagaagggctcagttttgag
gaaattgccgataaatatgatatggcagtagtgactgtcaaaaaacattattatgccgcc
tttcatgccttgaaatccatcctggagcagcacggcggtatggtatccctccttttcctg
ttgtggttaagaggcaaatga
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