Chryseolinea soli: D4L85_08530
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Entry
D4L85_08530 CDS
T05641
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chk
Chryseolinea soli
Pathway
chk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D4L85_08530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chk03400
]
D4L85_08530 (mfd)
Enzymes [BR:
chk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D4L85_08530 (mfd)
DNA repair and recombination proteins [BR:
chk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D4L85_08530 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Ntox21
Motif
Other DBs
NCBI-ProteinID:
AYB35462
UniProt:
A0A385SX55
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All DBs
Position
1971002..1974376
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AA seq
1124 aa
AA seq
DB search
MRANDFLSIYAADGFIKTVAAGIKASDHKNTQLKGLSGSLDALVMAAVFKLHHLDHVVIL
HDREEAAYFQNDLQNLLGREILIFPMSYKRPYEYDETENANILMRAEVLNKLANKTSPEI
IVTYPEALSEKVINKRSLASNTFTVTLGEKLDLAFLEEFLHNYDFEKTDFVYEAGQFAIR
GGIIDIFSFAYELPYRIELFGPEVDSIRTFDPGSQLSVDTLEKVNIIPNVQSKLMQEERQ
SFLEFISPATRLWYKDVQLTRDVIQKSFEKAEQSFQNIKKSSGTPVISTADKLFDNGEAF
AEKAASFHAIEFGSRFRFSDAQRFDFHSSAQPSFNKNFELLAKDLYDQQVQGFSNFITAD
VPRQTERLKGIFEEINAQLRFQPLDFAMRQGFIDAQLKIVCYTDHQIFERFHRYRSKEKF
TKSKALTLRELQTLQPGDFVTHIDYGIGKFAGLEKKEVNGHDQEAIRLVFRDDDLLYVSI
HSLHKISKYSGKDGSPPVISKLGSQEWENKKSKAKKRVKDIAKELISLYAKRKSAPGYAF
PPDGFLQAELESSFMYEDTADQARATEDVKRDMQQPHPMDRLVCGDVGFGKTEVAVRAAF
KAATEGKQVAVLVPTTILAMQHYRTFSERLSAFPVKIDYVSRFKTEKEIKQILDEVKTGD
INILIGTHRVVSKDIVFKDLGLLVIDEEQKFGVKVKDRLKELKVNVDVLTLTATPIPRTL
HFSLMGARDLSIISTPPPNRQPVTTELHTFDEALIRDAVSHELRRGGQVFFVHNRVSDIE
AIANVIYRLVPDSRIGIAHGQMEGDKLEKVMMRFIDGEYDVLVSTNIIESGLDIPNANTI
MINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLTPPTSLLTADSRKRLGALEEFSELGDGF
KVAMRDLDIRGAGNLLGGEQSGFITDLGFDTYHKILDDAIQELKETDFKDLFTAELEEKA
KLIVQDCVIETDLEILIPDNYVNNISERLQLYSRLDNIKDEKQLKEFSDEVRDRFGPLPP
ATEELVNTVRLRWLGEKLGFEKLSLKSDKMRAFFVSGNDKYFSSDVFGHILAFVQKHPRQ
CKMKDSAGKAMLVIESIKTVDAAIDLLGQMTIQTPKSAKEILSK
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
ttgagggcgaatgatttcttaagtatctacgccgcggatggtttcatcaagaccgtagcc
gcagggataaaagcgtccgatcacaagaatacccaactgaaaggtttatccggaagcctg
gacgccctggtcatggccgccgtcttcaagctccaccacctcgaccacgtggtcattctc
cacgatcgcgaagaagccgcctattttcaaaacgacctccagaacttgttgggacgggaa
atccttattttccccatgtcctacaaacggccctacgaatacgacgaaacggaaaacgcc
aacatcctcatgcgggcggaagtgctgaacaagctggccaacaaaacatcgcccgagatc
atcgtcacctatccggaagcgcttagcgaaaaagttatcaataaacgatcgctcgcttcc
aataccttcaccgttaccctcggcgaaaagctggatctggcgttcctggaagaattcctt
cacaactacgatttcgaaaaaacggactttgtttacgaagccgggcagtttgccatacgc
gggggcatcatcgatatcttttcgtttgcctatgagttgccttatcgcatcgaactcttc
ggccccgaagtagatagcatccgcaccttcgacccgggctcgcagctctcggtggatacg
ttggaaaaagtgaacatcattcccaacgtccagtccaagctgatgcaggaagagcgccag
tcctttttggaattcatctcgccggccactcgcctttggtacaaggatgtgcaactcacc
cgcgatgtgatccagaagagttttgaaaaagcagagcagtctttccaaaacatcaaaaaa
tcaagcggcacgccggtgatctccacagccgacaaactgtttgataacggcgaagctttc
gcagaaaaagccgcaagctttcacgccatcgaattcggcagtcgctttcgttttagcgac
gcgcaacgattcgatttccattcgtcggcacagccgtcgttcaacaaaaatttcgaattg
ctagccaaagatctgtacgatcagcaagtgcagggctttagcaatttcattaccgccgat
gtgccccgtcagaccgagcgtttgaagggcatcttcgaggagatcaatgcacaactccgt
tttcaaccgctcgatttcgcgatgcgacagggctttatcgatgcccaactaaagattgtt
tgttatacggatcaccagatcttcgaacgctttcaccgctatcgcagcaaagaaaaattc
acaaaatcgaaagcgcttaccctgcgcgagctgcaaaccctgcagcccggcgactttgtg
acacacatcgattatggcatcggcaaatttgccggcctggaaaaaaaagaagtgaacggc
cacgaccaggaagccattcgcctggtgttccgcgacgacgatttgctttatgtaagcatt
cactcccttcataagatctcaaagtattccggcaaagacgggtcaccccccgttatcagc
aagctgggctcgcaggaatgggaaaacaaaaaatccaaggcgaagaaacgcgtaaaggac
attgcgaaggaattgatctcgctctacgcaaaacgaaaatccgcccccggctatgcattc
cctcccgacggattcctgcaagcggaattggaatcgtccttcatgtatgaggacaccgcc
gaccaggcccgcgccacagaagatgtgaagcgcgatatgcagcagcctcatcccatggac
cggctcgtttgtggcgacgttggttttggtaaaaccgaagtagccgtgcgcgctgcattc
aaagccgccactgaaggaaaacaagtggccgtgctggtacccaccaccatcctggccatg
caacactatcgcacgttcagcgaacgtctttccgctttcccggtaaagatcgattacgtt
tcccggttcaaaaccgaaaaagagatcaaacagattctggacgaagtaaaaacgggcgac
atcaacattctcatcggcacacaccgggtcgtgagcaaggacatcgtgtttaaagacctg
ggacttttagtcattgacgaagaacaaaaatttggcgtgaaagtaaaggaccggttaaaa
gaactgaaagtaaacgtggacgtgctcaccctcacggctacacccatacccaggacgttg
cacttctccctgatgggtgcacgcgatctcagcatcatctccaccccgccacccaaccgc
caaccggtaaccaccgagttgcacacgtttgatgaagccctcattcgcgatgcggtcagc
cacgaattgcgccgcggcgggcaggtcttttttgtgcacaaccgcgtgagcgatatcgaa
gccatcgccaacgtcatctaccgtcttgtccccgactcgcgtatcggcatagcgcacgga
caaatggagggcgacaaattggagaaggtgatgatgcggtttattgacggtgaatatgac
gtgctggtatcgacgaacatcatcgaatcgggattggacattcccaatgccaacaccatc
atgatcaaccacgcccacatgttcggactttcggacctgcaccagatgcgcggccgcgtg
gggcggtcgaacaaaaaagcattttgttatttgctcactccgcctacttcacttctgacc
gcagattcgcgcaagcggcttggggccctggaagaattctccgaattgggcgatggcttc
aaagtggccatgcgcgacctcgacatccgcggtgccggcaacttgcttggtggagagcaa
agcggtttcatcaccgaccttggtttcgacacctatcacaagattctggacgatgctatc
caggaattaaaagaaacggatttcaaagatctcttcacggcagaattggaggaaaaggcc
aagcttattgtccaggattgtgtgatcgagaccgacctggaaatactgatccccgacaac
tatgtgaacaacattagcgaacggctccagttgtattcacggttggacaacatcaaggac
gaaaaacagttgaaagaattttcagacgaggtgcgcgaccgattcgggccgttgccgccg
gccaccgaagagctggtcaacacggtgcgtctgcgttggttaggggagaagttgggattc
gaaaaactaagcttgaaaagcgacaagatgcgcgctttcttcgtaagcggcaacgacaag
tatttcagctccgatgtgtttgggcacatcctcgcttttgtccaaaaacatccgcggcaa
tgcaagatgaaagacagtgccggaaaagcgatgctggtgattgaaagcattaagaccgtg
gacgccgccatcgacctcctgggtcaaatgaccattcaaacccccaagtcggccaaggaa
attctgtccaaatag
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