Corynebacterium humireducens: B842_04710
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Entry
B842_04710 CDS
T03576
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chm
Corynebacterium humireducens
Pathway
chm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B842_04710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chm03400
]
B842_04710
Enzymes [BR:
chm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B842_04710
DNA repair and recombination proteins [BR:
chm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B842_04710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AJE32793
UniProt:
A0A0B5D9C7
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Position
936245..938629
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AA seq
794 aa
AA seq
DB search
MARGRKQFQVGERTLSVSNLDKVLYPATGTTKADVIHYYLSVAEVIIPQLTRRPVTRKRW
VDGVGTEEEPGQVFFRKDLEDSAPSWIPTGRIAHKTSTNHYPLAEEPGVLAWFGQVAALE
LHAPQWRFGANGQPRNPDRLVLDLDPGEGVGLRDYAALDGTHNSETISQVARELARGLES
DHPDEVISTMKTADRAGKVFIDWSQNNASKTTVSPYSLRGRLRPTVAAPRTWEELADPDL
RHLEYEEVLERVAEGLDPLEPLRADPSETPDRLSTYRSMRDPSKTAEPVPEERPTARADG
EPTFVIQEHHARRLHWDFRLEHDGVLVSWAVPKGPPLDPSLNRLAVQTEDHPLEYGTFEG
IIAKGEYGAGEVSIWDAGTCEIEKWRAGKEVIAVLHGRPDGGLGGVPRRYALIHAPGMGE
EKHWLLKFMKDQPDDASRRPADPAPSEKAEVAESPAARPAFGVADLPSPMLATPGTPADI
KLGVQDGEEWVFEMKWDGYRIIAGVGVGTGDGRVVLASRNGHDYTALFPQAGELVELLQG
PAAEAGGAVFDGELVALDDRGRPDFGLLQAAAKGEAGDVTLRYMVFDILQLGAPGDQDAS
PQLRTPYRQRRELLREVLAEGEHVTVPPAHTGSLAQAEKISRELALEGLVAKRADSTYLP
GKRGKAWLKLKTQLHQEVVVIGARHGKGGRAGGIGSLLLAVPDADGQLRYAGRVGTGFTA
AQLGDIEKTLRRIERKTPPVDDVPAADQSDAWFVTPKLVGEVSLAGRTREGRVRQAAWRG
WRADKSPDEVRWEV
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgaggcaggaagcagtttcaggtcggcgagcgcacgctgtcggtgagcaacctc
gacaaggtgctttacccggccacgggcacgacgaaggccgatgtcatccactactacctc
agcgtcgccgaggtgatcatcccgcagctcacccgccgtcccgtcacccgtaaaaggtgg
gtcgacggggtcggcaccgaggaagagccggggcaggtgttcttccgcaaggatctggag
gattcggcgcccagctggatcccgaccggcaggatcgcgcacaagacctccaccaaccac
tacccgctggccgaggaaccgggcgtcctggcctggttcgggcaggtcgccgccctcgag
ctccacgccccgcagtggcgtttcggcgccaacggccagccccgcaaccccgaccggctg
gtgctcgacctcgacccgggcgagggggtggggctgcgcgactacgcggcgctcgacggc
acccacaactccgagacgatctcccaggtggcccgcgaactggcccgcggcctggagtcc
gatcacccggatgaggtgatctccacgatgaagacggccgaccgcgccgggaaggtgttc
atcgactggtcgcagaacaacgcctccaagaccaccgtcagcccgtactccctgcgcggt
cgcctgcggcccacggtcgccgcaccccgtacctgggaggagctggcggacccggacctg
cggcacctcgagtacgaggaggtcctcgagcgggtcgccgaggggcttgatccgctggag
cccctgcgcgccgacccctccgagacccccgaccggctgagcacctaccgctccatgcgc
gatccctcgaagacggcggagccggtgccggaggagcggccgacggcgcgtgcggacggt
gagccgaccttcgtcatccaggagcaccacgcccgccgcctgcactgggatttccgcctc
gagcacgacggggtgctcgtctcctgggcggtaccgaagggcccgccgctggacccctcc
ctcaaccgcctggccgtgcagaccgaggaccatcccctggagtacggcaccttcgagggg
atcatcgcgaagggggagtacggcgccggcgaggtgagcatctgggatgcgggcacctgc
gagatcgagaagtggcgcgcgggcaaggaggtcatcgccgtcctgcacggccgccccgac
ggtgggctgggtggtgtgccgcgccgctacgccctcatccacgccccgggcatgggggag
gagaagcactggttgctgaagttcatgaaggatcagcccgacgatgcttctcgacgcccc
gccgatcccgctcccagcgagaaggctgaggtcgctgagtcccctgccgcccgcccggcg
ttcggcgtcgcggacctgccgtccccgatgctcgccaccccgggcaccccggccgacatc
aagctcggcgtgcaggacggggaggagtgggtcttcgagatgaagtgggacggctaccgc
atcattgcgggagtgggcgtcgggacgggggacggccgggtggtgttggccagccgcaac
ggtcacgactacacggcgctgttcccgcaggctggggagctggtggagctgctgcagggc
ccggccgcggaggccggtggggcggtgttcgacggggagctggtggccctcgacgaccgc
ggccgccccgacttcgggctgctgcaggccgccgccaagggggaggccggggacgtgacg
ttgcgctacatggtcttcgacatcctccagctcggcgcgccgggtgaccaggacgcgagt
ccgcagctgcggactccgtaccgtcagcgccgcgaactcctgcgcgaggtgctggcggag
ggtgagcacgtcaccgtccctcccgcgcacaccgggagcctggcccaggcggagaagatc
agccgcgagctggcgctggaggggctggtggccaaacgcgccgactctacctacctgccc
ggtaagcggggcaaggcgtggctgaagctgaagacgcagctgcaccaggaggtggtggtg
atcggtgcccgccacggcaagggcgggcgcgccggcgggatcggttcgctgctgctggcg
gtgccggacgccgacggtcagctgcgctacgccggccgcgtcggcaccggcttcaccgcc
gcgcagctgggggacatcgagaagaccctgcgccggatcgagcgcaagaccccgccggtc
gacgacgtgccggcggcggaccagtccgacgcgtggttcgtcaccccgaagcttgtcggg
gaggtgtccctggcaggccggacgcgtgaggggcgggtacgccaggccgcgtggcgcggg
tggcgtgcggacaagagccccgacgaggtgcgctgggaggtgtag
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