KEGG   Corynebacterium humireducens: B842_04710
Entry
B842_04710        CDS       T03576                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
chm  Corynebacterium humireducens
Pathway
chm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:chm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B842_04710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chm03400]
    B842_04710
Enzymes [BR:chm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B842_04710
DNA repair and recombination proteins [BR:chm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B842_04710
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: AJE32793
UniProt: A0A0B5D9C7
LinkDB
Position
936245..938629
AA seq 794 aa
MARGRKQFQVGERTLSVSNLDKVLYPATGTTKADVIHYYLSVAEVIIPQLTRRPVTRKRW
VDGVGTEEEPGQVFFRKDLEDSAPSWIPTGRIAHKTSTNHYPLAEEPGVLAWFGQVAALE
LHAPQWRFGANGQPRNPDRLVLDLDPGEGVGLRDYAALDGTHNSETISQVARELARGLES
DHPDEVISTMKTADRAGKVFIDWSQNNASKTTVSPYSLRGRLRPTVAAPRTWEELADPDL
RHLEYEEVLERVAEGLDPLEPLRADPSETPDRLSTYRSMRDPSKTAEPVPEERPTARADG
EPTFVIQEHHARRLHWDFRLEHDGVLVSWAVPKGPPLDPSLNRLAVQTEDHPLEYGTFEG
IIAKGEYGAGEVSIWDAGTCEIEKWRAGKEVIAVLHGRPDGGLGGVPRRYALIHAPGMGE
EKHWLLKFMKDQPDDASRRPADPAPSEKAEVAESPAARPAFGVADLPSPMLATPGTPADI
KLGVQDGEEWVFEMKWDGYRIIAGVGVGTGDGRVVLASRNGHDYTALFPQAGELVELLQG
PAAEAGGAVFDGELVALDDRGRPDFGLLQAAAKGEAGDVTLRYMVFDILQLGAPGDQDAS
PQLRTPYRQRRELLREVLAEGEHVTVPPAHTGSLAQAEKISRELALEGLVAKRADSTYLP
GKRGKAWLKLKTQLHQEVVVIGARHGKGGRAGGIGSLLLAVPDADGQLRYAGRVGTGFTA
AQLGDIEKTLRRIERKTPPVDDVPAADQSDAWFVTPKLVGEVSLAGRTREGRVRQAAWRG
WRADKSPDEVRWEV
NT seq 2385 nt   +upstreamnt  +downstreamnt
atggcgcgaggcaggaagcagtttcaggtcggcgagcgcacgctgtcggtgagcaacctc
gacaaggtgctttacccggccacgggcacgacgaaggccgatgtcatccactactacctc
agcgtcgccgaggtgatcatcccgcagctcacccgccgtcccgtcacccgtaaaaggtgg
gtcgacggggtcggcaccgaggaagagccggggcaggtgttcttccgcaaggatctggag
gattcggcgcccagctggatcccgaccggcaggatcgcgcacaagacctccaccaaccac
tacccgctggccgaggaaccgggcgtcctggcctggttcgggcaggtcgccgccctcgag
ctccacgccccgcagtggcgtttcggcgccaacggccagccccgcaaccccgaccggctg
gtgctcgacctcgacccgggcgagggggtggggctgcgcgactacgcggcgctcgacggc
acccacaactccgagacgatctcccaggtggcccgcgaactggcccgcggcctggagtcc
gatcacccggatgaggtgatctccacgatgaagacggccgaccgcgccgggaaggtgttc
atcgactggtcgcagaacaacgcctccaagaccaccgtcagcccgtactccctgcgcggt
cgcctgcggcccacggtcgccgcaccccgtacctgggaggagctggcggacccggacctg
cggcacctcgagtacgaggaggtcctcgagcgggtcgccgaggggcttgatccgctggag
cccctgcgcgccgacccctccgagacccccgaccggctgagcacctaccgctccatgcgc
gatccctcgaagacggcggagccggtgccggaggagcggccgacggcgcgtgcggacggt
gagccgaccttcgtcatccaggagcaccacgcccgccgcctgcactgggatttccgcctc
gagcacgacggggtgctcgtctcctgggcggtaccgaagggcccgccgctggacccctcc
ctcaaccgcctggccgtgcagaccgaggaccatcccctggagtacggcaccttcgagggg
atcatcgcgaagggggagtacggcgccggcgaggtgagcatctgggatgcgggcacctgc
gagatcgagaagtggcgcgcgggcaaggaggtcatcgccgtcctgcacggccgccccgac
ggtgggctgggtggtgtgccgcgccgctacgccctcatccacgccccgggcatgggggag
gagaagcactggttgctgaagttcatgaaggatcagcccgacgatgcttctcgacgcccc
gccgatcccgctcccagcgagaaggctgaggtcgctgagtcccctgccgcccgcccggcg
ttcggcgtcgcggacctgccgtccccgatgctcgccaccccgggcaccccggccgacatc
aagctcggcgtgcaggacggggaggagtgggtcttcgagatgaagtgggacggctaccgc
atcattgcgggagtgggcgtcgggacgggggacggccgggtggtgttggccagccgcaac
ggtcacgactacacggcgctgttcccgcaggctggggagctggtggagctgctgcagggc
ccggccgcggaggccggtggggcggtgttcgacggggagctggtggccctcgacgaccgc
ggccgccccgacttcgggctgctgcaggccgccgccaagggggaggccggggacgtgacg
ttgcgctacatggtcttcgacatcctccagctcggcgcgccgggtgaccaggacgcgagt
ccgcagctgcggactccgtaccgtcagcgccgcgaactcctgcgcgaggtgctggcggag
ggtgagcacgtcaccgtccctcccgcgcacaccgggagcctggcccaggcggagaagatc
agccgcgagctggcgctggaggggctggtggccaaacgcgccgactctacctacctgccc
ggtaagcggggcaaggcgtggctgaagctgaagacgcagctgcaccaggaggtggtggtg
atcggtgcccgccacggcaagggcgggcgcgccggcgggatcggttcgctgctgctggcg
gtgccggacgccgacggtcagctgcgctacgccggccgcgtcggcaccggcttcaccgcc
gcgcagctgggggacatcgagaagaccctgcgccggatcgagcgcaagaccccgccggtc
gacgacgtgccggcggcggaccagtccgacgcgtggttcgtcaccccgaagcttgtcggg
gaggtgtccctggcaggccggacgcgtgaggggcgggtacgccaggccgcgtggcgcggg
tggcgtgcggacaagagccccgacgaggtgcgctgggaggtgtag

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