KEGG   PATHWAY: cho03008
Entry
cho03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Cryptosporidium hominis
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
cho03008  Ribosome biogenesis in eukaryotes
cho03008

Organism
Cryptosporidium hominis [GN:cho]
Gene
Chro.30219  protein kinase Ck2-beta [KO:K03115]
Chro.60083  protein kinase domain [KO:K03097] [EC:2.7.11.1]
Chro.80130  hypothetical protein [KO:K14544]
Chro.80362  hypothetical protein [KO:K14548]
Chro.30266  Flj12787-prov protein [KO:K14549]
Chro.50399  transducin / WD-40 repeat protein family [KO:K14552]
Chro.50418  hypothetical protein [KO:K14553]
Chro.10322  WD-repeat membrane protein [KO:K14554]
Chro.80172  WD repeat-containing protein 3 [KO:K14556]
Chro.80109  hypothetical protein [KO:K14557]
Chro.20305  WD repeat protein [KO:K14558]
Chro.70400  At5g66540/K1F13_21 [KO:K14559]
Chro.70129  S4 domain [KO:K14560]
Chro.40308  U3 snoRNP protein IMP4 [KO:K14561]
Chro.80497  fibrillarin [KO:K14563] [EC:2.1.1.-]
Chro.20013  hypothetical protein [KO:K14564]
Chro.30248  snoRNA binding domain [KO:K14565]
Chro.60440  ribosomal protein L7A [KO:K12845]
Chro.30435  hypothetical protein [KO:K11131] [EC:5.4.99.-]
Chro.30105  nucleolar protein, possibly involved in ribosomal RNA pseudouridinylation, in association with snRNAs [KO:K11129]
Chro.50206  small nucleolar RNP proteins; Gar1p [KO:K11128]
Chro.70261  hypothetical protein [KO:K14566]
Chro.10229  hypothetical protein [KO:K14567]
Chro.40319  ribosome biogenesis protein nep1 [KO:K14568] [EC:2.1.1.260]
Chro.40168  hypothetical protein [KO:K14569]
Chro.80234  hypothetical protein [KO:K14521] [EC:2.3.1.-]
Chro.80423  RNA 3'-Terminal Phosphate Cyclase-like protein [KO:K11108]
Chro.30109  POP4 (processing of precursor, S. cerevisiae) [KO:K03538] [EC:3.1.26.5]
Chro.30196  ribonuclease P (30kD) [KO:K03539] [EC:3.1.26.5]
Chro.80265  pacman protein [KO:K12619] [EC:3.1.13.-]
Chro.80264  CG10354-PA [KO:K12619] [EC:3.1.13.-]
Chro.40193  hypothetical protein [KO:K06943]
Chro.20234  1i973-prov protein [KO:K14537]
Chro.40462  GTPase [KO:K14538]
Chro.50178  AAA ATPase [KO:K14571]
Chro.50265  2810480G15Rik protein [KO:K14573]
Chro.70180  CG2972 gene product [KO:K11883]
Chro.70035  GTP-binding nuclear protein ran/tc4 [KO:K07936]
Chro.30346  exportin 1 (chromosome region maintenance protein 1) (caffeine resistance protein 2) [KO:K14290]
Chro.30166  Upf1p-interacting protein; Nmd3p [KO:K07562]
Chro.40357  eukaryotic translation initiation factor 6-like protein [KO:K03264]
Chro.80384  hypothetical protein [KO:K14574]
Chro.60456  elongation factor-like protein [KO:K14536] [EC:3.6.5.-]
Chro.20436  GTP-binding protein [KO:K14539] [EC:3.6.1.-]
Chro.30373  protein ad-004 [KO:K18532] [EC:2.7.4.3]
Chro.50179  extragenic suppressor of the bimD6 mutation-related [KO:K07178] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
cho03010  Ribosome
KO pathway
ko03008   
LinkDB

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