Chondrocystis sp. NIES-4102: NIES4102_02200
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Entry
NIES4102_02200 CDS
T05085
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chon
Chondrocystis sp. NIES-4102
Pathway
chon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES4102_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chon03400
]
NIES4102_02200
Enzymes [BR:
chon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4102_02200
DNA repair and recombination proteins [BR:
chon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES4102_02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAZ43220
UniProt:
A0A1Z4RL93
LinkDB
All DBs
Position
245763..249278
Genome browser
AA seq
1171 aa
AA seq
DB search
MAFASVVRAIANSPLTKELINKQNKGQSLLLNGMPRVPKGIVSSSLAKAENKNLFVVCPT
LEEAGRWAAQLEAMGWQTVNFYPTSEATPYDHFDPESETIWGQLAVISEQLSISNKEDYK
PVAIVATERSLQPHLPPPEVFKSYCLTLSKGMELSSKQLDESLARLGYERVSLVETEGQW
SRRGDIVDIFPVSAELPVRLEWFGDELEQLKEFDPANQRSLDKLPQLLLTPTSFSTIIAN
SILENGKSIESYLTEAELETLIEGNPPEGMRRFLGIAFENPASILDYLPENTLIAFDELE
QSQAHSDRWLELAQLQWQGIQPSLPKIYTDFQSCLDNSDKFTCIYLAEIAEATPRLDIAK
PDSVSVYNLQARPIPTTPHQFAKLASILRGKREIYNSMTLEKYQTWLVSAQPSRSVALLQ
EHDCSVQFIPNTQDFRAIEKAHIQHTAVALKYSGLAELEGFILPTYQIVVVTDKEFFGQQ
TLVSSGYIRKRRRATSKKVDLDKLRPGDYVVHKHHGLGQFLDLETLVSREYLVVKYADGT
LRVPADSLDMLTRFRQVGKRAPELDKMASQSWSKTKTRVRKNIKKLAVDLLKLYAKRSKL
SGYAYPADSPWQQELEDSFPYQPTPDQLKATQDIKIDLESDRPMDRLVCGDVGFGKTEVA
IRAIFKVITSGNKQVAFLAPTTILTQQHYHTLKERFAPYPISVGLLNRFRTPSEKKEILQ
RLATGELDVVVGTQQLLSADVKFKDLGMLVVDEEQRFGVNQKEKIKAFKSEVDVLTLSAT
PIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRNAIRNELDRGGQIFYVVP
RVEGIEEVSAQIREMIPGVRIAIAHGQMPESELESTMLTFSNGEADLLVCTTIIESGLDI
PRVNTIIVEDSQKFGLSQLYQLRGRVGRAGIQAHAWLLYPNKHTLSDLARKRLRALQEFS
QLGSGYQLATRDMEIRGVGSLLGAEQSGQMTQIGFDLYMEMLQEAIQEIQGQEIPKVDDT
QIDLKLTSFIPTSYIADQEQKMDAYRAIATATSKKELVQIAAEWEDRYGSIPAPTQQLIQ
VMELKQIAKAIGFSRIKPEGQQNIVLETPMAEPAWNLMAENLPKHLRSRFVYAPKKVIVR
GLGIVKPNAQLDSLIEWLGTIFKALPELELV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcatcagtagtacgggcgatcgcgaattcgcctttaaccaaagaacttatc
aacaaacaaaataaaggtcaatctttgttactcaacggtatgcctcgtgtaccgaagggt
attgtaagttcgagtttagcaaaagcagaaaataagaacctatttgtagtatgtccgaca
cttgaagaagctggacgttgggctgcccaattagaggcgatggggtggcagacggtaaat
ttttatcccacctcggaagcaacgccctatgaccattttgaccctgaatctgagacaatt
tggggacagttagcagtaattagtgagcagttatcaataagcaataaagaggactataaa
ccagttgctattgtggcgacagagcgatcgctacagcctcatttaccccccccagaggtg
tttaagtcctattgtctaacgctgtctaagggaatggaattgagttctaagcagttggat
gagtcgctggctagattgggttatgaacgggtatccttagtggaaactgaaggacaatgg
agtagacgcggtgatattgtcgatattttccctgtttcggcggaattacccgtaagactg
gagtggtttggggatgagttggaacaattaaaggaatttgaccctgctaatcaaagatct
ctggataaattaccccaattattattaaccccaacttcctttagtacgataattgctaat
agtattttagaaaatggtaaaagcattgaaagttatttaactgaggcagaattagagact
ttaattgaaggcaacccacctgaaggaatgagacgatttttagggattgcttttgaaaac
cctgcttcaattttagattatttaccagaaaatactttaatagcttttgatgaattagaa
cagtcccaagcccatagcgatcgctggttggaattagcacaattgcaatggcaaggtatt
caacccagtctgccaaaaatttatacagactttcaatcttgtcttgataatagtgataag
tttacttgtatttatttagctgaaattgctgaggctaccccacgtttagatatagccaag
ccagatagcgtatcggtttataacttacaagcgcgtccaattcctactactccacatcag
tttgctaagttagccagtatcttaaggggtaagcgagaaatttataacagcatgacttta
gaaaagtatcaaacctggttagtttctgcacaaccaagtcgttctgttgctttattacaa
gaacatgattgttctgtacaatttattcctaatacccaagattttcgggcaattgaaaag
gcgcatattcaacatacggcggtagctttaaaatattctggtttagcagaattggaaggg
tttattttacctacctatcagattgttgttgttaccgataaagagttttttggacaacaa
actttagtaagttctgggtatatccgtaaacgtcgtcgggctacttctaaaaaagtagat
ctcgataaattacgccctggggattatgtggtacataaacatcatggtttgggtcaattt
ctagatttagaaaccttagttagtcgtgaatatttagtagtaaaatatgccgacggtaca
ttaagagttcctgctgattcattggatatgttaactcgctttcgacaggtgggaaaacgt
gcgccagaattagataaaatggctagtcagtcttggtctaaaactaagacaagagtcaga
aaaaatattaagaaactagcagtagatttattaaaactctatgccaaacgatcaaaactt
tctggttatgcctatcctgccgatagtccctggcaacaagaattagaagattccttcccc
tatcaaccaaccccagatcaactaaaagctacccaggatatcaaaatagatttagaaagc
gatcgcccgatggatcgtttagtatgtggtgatgttggttttggcaaaacggaagtagca
attagggcaatttttaaagtaattactagtggtaataaacaggttgcttttcttgcacca
actactattttaacccagcaacattaccataccctcaaggaaagatttgcgccttatcct
attagtgtgggtttattaaatcgtttccgcactccttcagaaaaaaaagagatcctacaa
cgcctggctacaggagaattggatgtagtggtgggtacacagcaattattatctgctgat
gttaaatttaaagatttaggaatgctagtagttgatgaagaacaaagatttggggtaaac
caaaaggaaaaaattaaagcctttaaatctgaggtggatgttttaaccctctcggctact
cccattccccgtactctttatatgtctttatcgggtattcgcgagatgagtttgattact
actcccccaccttcccgtcgtccaattaaaacccatctttccccctataaccctgaagtc
gttcgtaatgcaattcgtaatgaattagatcggggtggacagatattttatgttgtccct
agggtagaaggtattgaggaagttagcgcgcaaataagggaaatgattcctggtgtaaga
attgcgatcgctcatggacagatgccagaatcggaattagaatctaccatgttaactttt
agtaatggggaagcagatttattagtttgcaccactattattgagtctgggttagatatt
ccccgtgtaaatacaattattgtggaagattcccagaaatttggcttgtcgcaactatat
cagttaagaggtcgagtaggacgagcagggattcaggcacacgcttggttactatacccc
aataaacacactttatcagatctagctcgtaaaagactcagagctttacaagaatttagt
caactgggttcgggttatcaattggcaactagggatatggaaatacgcggtgtgggtagt
cttttgggtgcagaacaatcaggacaaatgactcaaataggttttgatctttatatggaa
atgctgcaagaagcaattcaagagatccaaggtcaagaaatacccaaggtagatgatacc
caaattgatcttaagcttacttcctttattcctaccagctacatcgccgatcaagaacaa
aaaatggatgcttatcgggcgatcgctactgcaacatcgaaaaaagaactcgtgcagatc
gcagcagaatgggaagatcgttatggatcaatccctgcgcctacccaacagctaattcaa
gtgatggaattaaaacaaatagctaaagcgatcggtttttctcgcattaaacctgaagga
caacaaaatattgtgttagaaacccctatggctgaacctgcttggaatttaatggcggaa
aatctccctaagcacttgcgatcgcgttttgtttatgcgcccaagaaggttattgtacgc
ggtttgggtattgttaagcctaatgcgcaattagatagtttgattgagtggttgggtaca
attttcaaggctttacctgagttggagttagtttaa
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