Chryseobacterium sp.: F7R58_01030
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Entry
F7R58_01030 CDS
T09035
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chra
Chryseobacterium sp.
Pathway
chra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F7R58_01030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chra03400
]
F7R58_01030 (mfd)
Enzymes [BR:
chra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F7R58_01030 (mfd)
DNA repair and recombination proteins [BR:
chra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F7R58_01030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
CCDC32
Maelstrom
Motif
Other DBs
NCBI-ProteinID:
QFG52211
UniProt:
A0A5P5ZNG7
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All DBs
Position
217098..220451
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AA seq
1117 aa
AA seq
DB search
MELKNISESLLPELLRLNFGETLFSELDKNRAVTVKGFAGSAPSLLAAEYFFVHKKNLLF
LVNDKEEGLYITAEMEELVGQENVLYFPPSYLEPYQVEKVQNANLVLRTEVLNSLSSSTK
PRVIVAPFAALSEKVLQQEDFKAITHTIKVRDLLDFDFILELLTQYEFHQTDFVSEPGEF
SVRGGILDVFSYSAEQPYRITFFGSEVESIKVFDLETQLSKSSVPEFQLVSNMNFTASGT
KVSFFSLLPADSVVFSKDAYLGIKRIRDFFARAEQNFSELSTALKHKPPAELFISETELT
ERITSFPVIDFTAQQIFTSGVFQLSQQPQPVFHKNFEMLARDLKEKKEMGYQTWISFSSE
KQMERLESILEELNHDVSFRPFKSELHAGFVDADLKVSVYTDHQIFDRFQRFKAKNNFAK
SEQLTLKDLLSLKVGDYIAHIDHGIGKFMGLVKINNNGKVQECFKLVYKNQDLLYVSIHS
LDKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAQRKSAKGFSYAP
DSYLQNELEASFIYEDTPDQEKATQDVKKDMEAQTVMDRLVCGDVGFGKTEVAIRAAFKA
ATDGKQVAMLVPTTILAFQHYRSFQERLKDFPVAISYMNRFRTAKQKAETLAGLKDGKID
IVIGTHQLVSDKVKFKDLGLLIIDEEHKFGVSVKDKLKTMKANVDTLTLTATPIPRTLQF
SLMAARDLSVIKTPPPNRQPVETHIVGFDEELIRDAVSYEIQRDGQVFFINNRIENLKDI
AGLIQRLVPDAKVITGHGQMEGKQLEQNVLDFMNGKYDVLVSTTIVESGVDVPNANTIFI
NDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQI
AMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQHNEEFEDLFENEEDRRKL
ISATKEVNIDTDLELMLPDSYVQSTEERLSLYQRLAEVKSAAELAVFENELKDRFGNLPQ
EARNLLKSVELKWLAAEVGFDKLIVKNGVFLGYFPANPQDRFYQSDKFRHIITYLTQNPA
EATLKEKSTNEGTQLMMRKEKVKNVDEVTAVLERILN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaaaacatcagcgaaagtttactcccggaacttctgcggctgaatttcggt
gaaacacttttttcagaacttgacaaaaacagggcggtcactgtaaaaggatttgccggc
tctgcaccatctttactcgctgccgaatattttttcgtacataagaaaaacctccttttc
ctcgtgaatgacaaagaagagggactttatattactgccgagatggaagagctggtgggt
caggagaacgttctctattttccaccgtcctatcttgagccttatcaggtggagaaagtt
cagaatgcaaaccttgttttaaggactgaagttctgaattctctgagttcatcgactaaa
ccacgtgtaattgtggccccgtttgctgcactgagtgagaaagtacttcagcaggaagat
ttcaaggcgataacgcatacgataaaggtgagagaccttctggattttgattttatactg
gagcttctgactcagtacgaatttcatcagaccgattttgtgtcggagcccggtgaattt
tctgtacgaggcgggattctggatgtcttttcatattcggccgaacagccataccgtatc
acctttttcggaagtgaagttgaaagtattaaggtgtttgatcttgaaacccagctttcc
aaatcgtcggttccggagtttcagttggtgtccaacatgaatttcacggcgtccggtacc
aaggtttcctttttcagcctgttgcctgccgattctgttgttttttcaaaggatgcctac
cttggcattaaaaggatccgtgacttttttgccagggccgagcaaaatttcagtgaactc
agtacggctctgaaacataagccgccggcagaactttttatttctgagactgaacttacc
gaaaggataacctctttccctgttatcgattttactgcacaacaaatctttacttccgga
gtattccaactgagccaacagccgcagccggttttccacaaaaactttgagatgcttgcg
cgggatctgaaggaaaagaaggagatgggatatcaaacctggatttccttttcatcggag
aagcagatggagaggcttgaaagcattttggaagaactgaaccacgatgtatcattccgc
ccatttaaaagtgagcttcacgctggcttcgtggatgctgacctaaaggtttcggtatat
acagatcaccagatatttgaccgctttcagcgctttaaagcgaaaaataacttcgcgaaa
tctgaacagctcaccctcaaagatcttctttccctgaaggtaggtgattatattgcccat
attgaccatggaattggaaaattcatgggtctggtaaagataaacaacaacggcaaagtg
caggaatgctttaaactcgtatacaagaatcaggatttgctctatgtaagtattcattcg
ctggataagatctccaagtacaacggccccgacggcaaagagatcgtgttgtccaaactg
ggctcgccggcctggaaatccctgaagcagaaaaccaaagccaaggtaaagcagatcgcc
tttgaccttataaaactttatgcacagcggaaatcggccaaaggattcagttacgcacct
gattcctatcttcagaatgagcttgaagccagctttatctatgaggatacgccggaccag
gagaaagctacccaggatgtaaagaaagatatggaggcgcaaaccgtaatggaccgtctg
gtttgcggagatgtaggtttcggtaagactgaggtagccatccgtgccgctttcaaagca
gctaccgacggaaagcaggtggcaatgcttgttcctacgaccatcctggctttccagcac
tacaggagttttcaggagaggcttaaagatttcccggtcgcaatttcctacatgaaccgg
ttccggacggccaaacagaaagctgagacactggcgggtcttaaggacggcaaaatcgat
attgtaatcgggacgcatcagttggtttcggataaggttaaatttaaagacctcggtctg
ctgattattgacgaggaacataaattcggggtatctgttaaggataagctaaagacgatg
aaggcaaatgtggataccttgacgcttacagctactccgattccgcggacccttcagttt
tccctgatggctgcgagggatctttctgtaatcaagactccaccaccaaaccgtcaacct
gtggaaactcatattgtaggttttgatgaagagctgatccgggatgcggtttcctatgaa
atacagcgggacggtcaggtatttttcatcaataacaggatagagaatttgaaggatatt
gccggactcatccagaggctggtgcccgatgctaaggtgatcaccggacacggccagatg
gaaggcaaacaactggaacaaaatgtcctggatttcatgaacggtaaatatgatgtgctg
gtctccaccacaatcgtggaaagtggggtagatgttcccaatgccaataccatcttcatc
aatgatgcgcagcgttttgggatggcagacctgcatcagatgcgcggacgtgtaggccgg
agtaaccgcaaggcattctgctaccttattacgccaccgtttgatatggtaacctccgat
gcacgcaagcggctggaggcaattgagcagttttcggacctgggcagcggcttccagatt
gccatgaaggatcttgagatccgtggtgccggtgatcttttgggtgccgagcaaagtgga
ttcattaacgagatgggttttgagacttaccagaaaatcatgcaggaagctctggaggaa
ctccagcataatgaagaatttgaagatctttttgagaatgaagaagaccgccggaaactg
atcagtgccactaaagaggtaaatattgacacagaccttgagctgatgctgccggacagc
tacgtgcagagtacggaagaaagactgagcctgtaccagagactcgcggaagtgaagtcg
gccgcagaactggctgtatttgaaaatgaactgaaagacaggtttggtaatttaccgcag
gaagcccgtaacctcctgaagtcggttgagctgaaatggcttgccgctgaggttgggttt
gacaagttaatagtgaagaacggcgtattcctgggttactttccggcgaatccgcaagac
aggttttatcagagcgataaattccgccacatcatcacttatctgactcaaaatccggcg
gaggcaacattgaaggaaaagagtactaacgagggtacgcagttaatgatgcgaaaggaa
aaggttaaaaacgtagatgaagtaactgcggtattggaaagaattttaaattaa
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