Chryseobacterium sp.: F7R58_04555
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Entry
F7R58_04555 CDS
T09035
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chra
Chryseobacterium sp.
Pathway
chra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F7R58_04555 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chra03400
]
F7R58_04555 (ligD)
Enzymes [BR:
chra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F7R58_04555 (ligD)
DNA repair and recombination proteins [BR:
chra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F7R58_04555 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QFG52844
UniProt:
A0A5P5ZMZ4
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All DBs
Position
967429..970122
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AA seq
897 aa
AA seq
DB search
MALEEYRRKRSKDKTPEPFGGKSTGKELHFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSLDPSVKRLAMMVEDHPFDYRNFEGAIPKGQYGGGTIIVWDEGTYLPAEPAKSRKKQEQ
QLLEQLKAGKIKFTLNGTKLKGEFALVKAHGRGDNGWLLMKLNDKYADTEDVTLKNRSVL
SDKTIAEMEEAPVEVYGQKDSKKAKDETEAKTASKTSKKKTAETEKSKPAVKKPAKSVEK
LLAKAPEQPFYTELAPMLATLVDKPFDSDEWLYEVKWDGYRAVAFMKEGEVTLKSRNNKS
FSEKFYPVQQELAKLKMDAVLDGEVVVLDKDGKADFGKLQNWRSDSDGDLVYYVFDLLWY
RGRDLKGLPLTDRRAVLSQILPKSDRIMLSQEFHTSGIEFLEAARNMDLEGIMAKRKDSV
YQTKNRTKDWLKIKANKRQEVVIGGFTVNDGTKKVFSSLLVGVYEGRKLVYSGKVGTGFN
TKTQKEMMNLFKPLITDKHPFTLEPDVNKPSRFRHNPPNATVTWLKPKLICEVDYTELTS
DGVMRHPSFKGMRSDKKAAQVVLEQEKPVQEVVPEAEPVVTARKDPGRRTLLNPKEKTQV
KKVGGHELKFTNLDKVFWPDEKLTKRDLINYYYRAAPFILPYLKDRPQSMNRFPDGIEGE
GFYYKDVSGSAPSWVKTFDYTSDSDKRARKYLVGTDEASLLYMANLGCIEMNPWNSTIKK
PDNPTYCILDLDPDKNSFNDVIKTAQVTRQLLDDLDIPSYCKTSGSTGLHIYIPLNNKYT
YEESKEFARLLVTIVQGELPKLTTIERIIKKRGGRIYLDFLQNRPHATIAAPYSLRPKPG
ATVSMPLHWDEVKKGLKMKDFTIFNALERMESEGDIFKPVLGKGINLKKVIKKMEGL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcactggaagaataccgtaggaaacgctctaaagataaaacaccagaaccgtttggt
gggaaatccaccggaaaggaacttcattttgtggttcagaaacacgatgcctcgcatctg
cattacgacttccggctggaaatggacggcgtgctgaaaagttgggctgttccaaaaggg
ccctcactggatccctcagtaaagcggttggccatgatggtggaagatcacccttttgat
taccgtaactttgaaggtgccattccgaaaggccagtacggtggcggtaccatcatagta
tgggatgagggcacttatctgcctgctgaacccgcaaaaagccgtaagaaacaggagcag
caactgttggaacaactgaaagcggggaaaatcaaatttacacttaacggcacaaaacta
aagggcgaatttgccttggtcaaagcgcacggccgtggtgataacggttggctgctgatg
aagcttaacgataaatatgccgacactgaagatgtaactctaaaaaaccgttcggtactt
tctgataaaacaatagcggaaatggaagaggccccggtggaagtgtacggtcagaaggat
tccaaaaaagctaaagacgaaactgaagcaaaaactgcctccaaaacttcaaaaaagaaa
actgccgaaaccgaaaagagtaaacctgcggtaaagaagcctgcgaaatctgtggagaaa
ttgctggcgaaggcccctgagcagcccttttatacggagcttgcccccatgctggctaca
ctggtggataaacccttcgacagtgacgaatggctttacgaagtgaaatgggatggttac
cgtgcggtggcttttatgaaagagggtgaagtgaccctgaaatcgcgcaataataaaagc
ttcagcgaaaaattttatcccgtgcagcaagaactggcaaaacttaaaatggatgcggtg
ctggatggcgaggttgtggtcctggacaaagacggaaaagcggacttcggcaaactccag
aattggcgcagtgactccgacggcgatttggtgtactacgttttcgacttgctgtggtat
cggggcagggacctgaaaggactccccctaaccgacagacgcgcggttctgtcacagatt
ctgcccaaatcagaccggattatgctcagtcaggagtttcatacctcgggtattgaattt
ctggaagctgcccgcaatatggatctcgaaggcataatggccaagcgtaaggacagtgtg
taccagaccaaaaaccgaacgaaagactggcttaagatcaaagccaacaaaaggcaggag
gtggtaataggtggattcaccgtgaatgacggtaccaaaaaagtgttcagcagcttgttg
gtgggtgtctatgagggcaggaaactcgtatacagtggtaaggtaggcaccggctttaat
actaagacccaaaaggaaatgatgaatctctttaaaccgctgattacggataagcatcct
ttcactctggaacctgatgtaaacaaaccatcccgtttccgccacaatccacccaacgcc
actgttacctggttaaaacctaaacttatctgtgaagtggattacactgagcttacatca
gacggcgtaatgcgccatccctctttcaaaggaatgcggtccgataaaaaagccgcgcag
gtggttctggaacaggaaaaaccggtgcaggaagtcgttcctgaagcagagccggtggtt
actgcacggaaagatccggggcggaggaccctgctgaatccgaaagaaaaaacccaggta
aaaaaggttggcggccatgaactgaaatttaccaatttagataaggtattctggcccgat
gaaaaacttacaaaacgcgatctgataaattactattaccgcgccgctccttttattttg
ccgtatctgaaagacagacctcaaagtatgaaccgctttccggacggtatagagggtgaa
ggtttctattataaagacgtttctggtagcgctccttcttgggtgaaaacttttgactat
accagcgactctgataaacgtgcccgaaaatatctggttggtacggacgaagcatcactg
ctctatatggcgaatttgggttgtattgagatgaacccgtggaattccactataaagaag
cctgataatcccacctactgcattctcgatttggaccccgataagaattcatttaatgac
gtcatcaaaactgcgcaggtaacccgccagctgctggacgaccttgatattccctcatac
tgcaagaccagcggttccacaggtctccacatctacattccgctcaataataaatatacc
tatgaagagtcaaaggaatttgcgcgccttttggtcacaattgtacagggtgagctcccc
aaactaacaacaattgaaagaattattaaaaaacgcggaggcaggatttatcttgatttt
ctgcagaaccgtccgcatgccactattgccgcaccttactccctgcggcccaaacccggg
gcgactgtgtcaatgccgctgcattgggacgaagtgaagaaaggtttgaagatgaaggat
tttaccatttttaatgcgctggagcgaatggaaagtgagggcgatattttcaaacccgtt
ctgggcaaaggcattaacctcaaaaaggtgattaagaaaatggaagggctttag
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