KEGG   Chryseobacterium sp.: F7R58_04555
Entry
F7R58_04555       CDS       T09035                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
chra  Chryseobacterium sp.
Pathway
chra03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:chra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F7R58_04555 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chra03400]
    F7R58_04555 (ligD)
Enzymes [BR:chra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F7R58_04555 (ligD)
DNA repair and recombination proteins [BR:chra03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F7R58_04555 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QFG52844
UniProt: A0A5P5ZMZ4
LinkDB
Position
967429..970122
AA seq 897 aa
MALEEYRRKRSKDKTPEPFGGKSTGKELHFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSLDPSVKRLAMMVEDHPFDYRNFEGAIPKGQYGGGTIIVWDEGTYLPAEPAKSRKKQEQ
QLLEQLKAGKIKFTLNGTKLKGEFALVKAHGRGDNGWLLMKLNDKYADTEDVTLKNRSVL
SDKTIAEMEEAPVEVYGQKDSKKAKDETEAKTASKTSKKKTAETEKSKPAVKKPAKSVEK
LLAKAPEQPFYTELAPMLATLVDKPFDSDEWLYEVKWDGYRAVAFMKEGEVTLKSRNNKS
FSEKFYPVQQELAKLKMDAVLDGEVVVLDKDGKADFGKLQNWRSDSDGDLVYYVFDLLWY
RGRDLKGLPLTDRRAVLSQILPKSDRIMLSQEFHTSGIEFLEAARNMDLEGIMAKRKDSV
YQTKNRTKDWLKIKANKRQEVVIGGFTVNDGTKKVFSSLLVGVYEGRKLVYSGKVGTGFN
TKTQKEMMNLFKPLITDKHPFTLEPDVNKPSRFRHNPPNATVTWLKPKLICEVDYTELTS
DGVMRHPSFKGMRSDKKAAQVVLEQEKPVQEVVPEAEPVVTARKDPGRRTLLNPKEKTQV
KKVGGHELKFTNLDKVFWPDEKLTKRDLINYYYRAAPFILPYLKDRPQSMNRFPDGIEGE
GFYYKDVSGSAPSWVKTFDYTSDSDKRARKYLVGTDEASLLYMANLGCIEMNPWNSTIKK
PDNPTYCILDLDPDKNSFNDVIKTAQVTRQLLDDLDIPSYCKTSGSTGLHIYIPLNNKYT
YEESKEFARLLVTIVQGELPKLTTIERIIKKRGGRIYLDFLQNRPHATIAAPYSLRPKPG
ATVSMPLHWDEVKKGLKMKDFTIFNALERMESEGDIFKPVLGKGINLKKVIKKMEGL
NT seq 2694 nt   +upstreamnt  +downstreamnt
atggcactggaagaataccgtaggaaacgctctaaagataaaacaccagaaccgtttggt
gggaaatccaccggaaaggaacttcattttgtggttcagaaacacgatgcctcgcatctg
cattacgacttccggctggaaatggacggcgtgctgaaaagttgggctgttccaaaaggg
ccctcactggatccctcagtaaagcggttggccatgatggtggaagatcacccttttgat
taccgtaactttgaaggtgccattccgaaaggccagtacggtggcggtaccatcatagta
tgggatgagggcacttatctgcctgctgaacccgcaaaaagccgtaagaaacaggagcag
caactgttggaacaactgaaagcggggaaaatcaaatttacacttaacggcacaaaacta
aagggcgaatttgccttggtcaaagcgcacggccgtggtgataacggttggctgctgatg
aagcttaacgataaatatgccgacactgaagatgtaactctaaaaaaccgttcggtactt
tctgataaaacaatagcggaaatggaagaggccccggtggaagtgtacggtcagaaggat
tccaaaaaagctaaagacgaaactgaagcaaaaactgcctccaaaacttcaaaaaagaaa
actgccgaaaccgaaaagagtaaacctgcggtaaagaagcctgcgaaatctgtggagaaa
ttgctggcgaaggcccctgagcagcccttttatacggagcttgcccccatgctggctaca
ctggtggataaacccttcgacagtgacgaatggctttacgaagtgaaatgggatggttac
cgtgcggtggcttttatgaaagagggtgaagtgaccctgaaatcgcgcaataataaaagc
ttcagcgaaaaattttatcccgtgcagcaagaactggcaaaacttaaaatggatgcggtg
ctggatggcgaggttgtggtcctggacaaagacggaaaagcggacttcggcaaactccag
aattggcgcagtgactccgacggcgatttggtgtactacgttttcgacttgctgtggtat
cggggcagggacctgaaaggactccccctaaccgacagacgcgcggttctgtcacagatt
ctgcccaaatcagaccggattatgctcagtcaggagtttcatacctcgggtattgaattt
ctggaagctgcccgcaatatggatctcgaaggcataatggccaagcgtaaggacagtgtg
taccagaccaaaaaccgaacgaaagactggcttaagatcaaagccaacaaaaggcaggag
gtggtaataggtggattcaccgtgaatgacggtaccaaaaaagtgttcagcagcttgttg
gtgggtgtctatgagggcaggaaactcgtatacagtggtaaggtaggcaccggctttaat
actaagacccaaaaggaaatgatgaatctctttaaaccgctgattacggataagcatcct
ttcactctggaacctgatgtaaacaaaccatcccgtttccgccacaatccacccaacgcc
actgttacctggttaaaacctaaacttatctgtgaagtggattacactgagcttacatca
gacggcgtaatgcgccatccctctttcaaaggaatgcggtccgataaaaaagccgcgcag
gtggttctggaacaggaaaaaccggtgcaggaagtcgttcctgaagcagagccggtggtt
actgcacggaaagatccggggcggaggaccctgctgaatccgaaagaaaaaacccaggta
aaaaaggttggcggccatgaactgaaatttaccaatttagataaggtattctggcccgat
gaaaaacttacaaaacgcgatctgataaattactattaccgcgccgctccttttattttg
ccgtatctgaaagacagacctcaaagtatgaaccgctttccggacggtatagagggtgaa
ggtttctattataaagacgtttctggtagcgctccttcttgggtgaaaacttttgactat
accagcgactctgataaacgtgcccgaaaatatctggttggtacggacgaagcatcactg
ctctatatggcgaatttgggttgtattgagatgaacccgtggaattccactataaagaag
cctgataatcccacctactgcattctcgatttggaccccgataagaattcatttaatgac
gtcatcaaaactgcgcaggtaacccgccagctgctggacgaccttgatattccctcatac
tgcaagaccagcggttccacaggtctccacatctacattccgctcaataataaatatacc
tatgaagagtcaaaggaatttgcgcgccttttggtcacaattgtacagggtgagctcccc
aaactaacaacaattgaaagaattattaaaaaacgcggaggcaggatttatcttgatttt
ctgcagaaccgtccgcatgccactattgccgcaccttactccctgcggcccaaacccggg
gcgactgtgtcaatgccgctgcattgggacgaagtgaagaaaggtttgaagatgaaggat
tttaccatttttaatgcgctggagcgaatggaaagtgagggcgatattttcaaacccgtt
ctgggcaaaggcattaacctcaaaaaggtgattaagaaaatggaagggctttag

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