Chryseobacterium sp. wdc7: QGN23_02655
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Entry
QGN23_02655 CDS
T09471
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chrc
Chryseobacterium sp. wdc7
Pathway
chrc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QGN23_02655 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrc03400
]
QGN23_02655 (ligD)
Enzymes [BR:
chrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QGN23_02655 (ligD)
DNA repair and recombination proteins [BR:
chrc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QGN23_02655 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WHF53104
LinkDB
All DBs
Position
complement(589981..592533)
Genome browser
AA seq
850 aa
AA seq
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MPLEEYNKKRKFNETPEPEGKEMKSDNKLIFVIQRHSASRLHYDFRLEMDGVLKSWAVPK
GPSLNPEDKRLAMMTEDHPFSYHDFEGNIPEGNYGAGEVEIWDSGTYEPLEKVEGKSDAL
IMRHELHQDSLKFILHGKKLKGEFALVKMKNSKEGNAWLLIKHKDKFALEEYDAEEHIPK
KSKVTLREENRPGKKKIKIPNKESKTFKNYTPSLIGEKKLKDFIKPMLAQTGEKAFNNKD
WVFEIKWDGYRAVADLREPVIQLYSRNGLSYSDKFSKIIKALDHQNHQMVLDGEIVAFNK
EGKPDFQILQKIGENPDLAMTYQVFDLLWLNGHSTENLTLVQRKELLKDALTENNVIKYC
EHIPQNGIDFFQQIKKMELEGMIAKKTDSIYSEGVRSSDWLKIKFQNTEDVLICGFTEPN
GSRKNFGALILGTFADGQLKYCGHAGTGFADKILDSLYELFKPLIIGNCPFEEVPKTNAP
ATWLKPELVCEIKFTEKTKDGIFRHPVYMGLRSDKDKEDLMNEEEEEIENSTSLKMKISE
SKVEKDSVKTKTQKMTKAVKLTNQNKIYFPESGITKGEVIDYYQSVAKYILPHLKNRPQS
LNRFPNGIEGLSFYHKDAGNDAPDWIEKVSVFSESNEKDIEYLICNTADDLAYLNNLGCI
DLNPWNSTVIDLDKPTWLALDLDPSEKNTFDQVIETALCVKEILDLAKIKGFCKTSGSSG
IHIFIPMGEQYEVELVKNFAHLLMQKVQQKLPDLTTLERNLKKRDKNKIYLDYLQNRTGQ
TLASVYSVRPKPFAPVSMPLLWEELKSGLKPTDFNIHNALERIKKNGDLFKPVLGKGIDM
LKALENLSKI
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccactcgaagaatacaataaaaaacggaaattcaacgaaactcccgaaccggaagga
aaagaaatgaaatcagataacaaactgattttcgtgattcaacggcattctgcgtccaga
ttgcattatgatttccgtttggaaatggacggagttttgaaaagttgggctgttccgaaa
ggaccttcgctgaatccggaggataaaagactggcgatgatgaccgaagatcatcctttt
tcttaccacgattttgaaggaaatattcccgaaggcaattatggcgcaggcgaagttgaa
atctgggattccggcacttacgagcctttggaaaaagttgaaggtaaatctgatgccttg
attatgcgccacgaactgcatcaagattctttaaaatttattcttcacggtaaaaaatta
aaaggggaatttgctttagtaaagatgaaaaactccaaagagggaaatgcctggctatta
attaaacacaaagataaattcgcactggaggaatatgacgctgaagagcatattcctaaa
aaatcgaaagtaacgttacgcgaagaaaaccgtcccggtaaaaaaaaaataaaaattcca
aataaagaatcgaaaacattcaaaaattatacgccctcattgattggtgaaaaaaaattg
aaagatttcattaaacccatgttggctcaaacgggagaaaaagcctttaataataaagat
tgggttttcgaaattaaatgggatggttatcgtgctgtagctgatttacgggaaccagta
attcaactatattcccggaacggactctcttattcggataaattttcgaaaatcattaaa
gccttagatcatcaaaatcatcagatggttttagacggtgaaattgtagctttcaataag
gaaggaaaacctgattttcaaatcttacaaaaaataggtgaaaatccggatttagcaatg
acttatcaggttttcgatttgctttggctcaatggacattccactgaaaatttaactttg
gttcaacgcaaagaattgctcaaagacgctttaacagaaaataatgtcattaaatattgt
gagcatattccccaaaatgggattgatttttttcaacagatcaaaaagatggaattagaa
ggaatgatcgcaaaaaaaacagacagtatttattcagaaggtgtccgttcttcagactgg
ctgaaaatcaaattccagaatacagaagatgttttaatttgtggttttaccgaaccgaac
ggttcgcggaaaaatttcggtgcgctgattctgggaacttttgccgatggtcaattaaaa
tattgcggacatgccgggactggttttgcagataaaattttagattctttatatgaattg
tttaaaccgttaattatcggaaactgtccttttgaagaagttccaaaaaccaatgctcct
gcgacttggttgaaacctgaattggtttgtgaaataaaatttacagaaaaaacgaaagat
ggaattttccggcatcccgtttatatgggacttcgaagtgataaagacaaagaggatttg
atgaatgaagaagaggaagaaattgaaaattcgacttctttaaaaatgaaaataagtgaa
agcaaagtagaaaaagattcagtaaaaactaaaactcaaaagatgacaaaagccgttaaa
ctgaccaatcaaaacaagatctatttcccggaaagtggtattacgaaaggtgaagttatt
gattattatcagtctgtggcgaaatatattttaccccatttaaaaaaccgtccgcaatcg
ctgaaccgttttcccaatggtattgaaggcttgagtttttatcataaagatgccggaaac
gatgcgcctgactggattgaaaaagtttcggtcttttcagaatcaaatgaaaaagacatt
gaatatttaatctgcaatacagcagatgatttggcttatttaaataatttaggatgtatc
gatttgaatccatggaattccacggtcatcgatctggataaaccaacctggctagctctg
gatttggatccatcagagaaaaatacttttgaccaggttatcgaaactgctttgtgtgta
aaggagattttggatttagcaaaaattaaaggcttttgcaaaacttcaggaagttcagga
attcatattttcattccaatgggtgaacagtatgaggttgaattagtgaaaaatttcgcc
catcttctaatgcagaaagtacagcaaaaattaccggatttaactactttagaaaggaat
ttgaaaaaacgggataagaataaaatttatctggattatctgcaaaaccggaccggtcag
acgttggcgagtgtttacagcgttcgtccaaaaccttttgcaccggtttcaatgccttta
ctttgggaagaactgaagtccggtttgaaaccgaccgatttcaatattcataatgctttg
gagcgtattaaaaagaatggcgatttgtttaaaccagttttagggaaaggaattgatatg
ttgaaagctttggaaaatctttctaaaatttaa
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