Chryseobacterium sp. wdc7: QGN23_11095
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Entry
QGN23_11095 CDS
T09471
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chrc
Chryseobacterium sp. wdc7
Pathway
chrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QGN23_11095 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrc03400
]
QGN23_11095 (mfd)
Enzymes [BR:
chrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QGN23_11095 (mfd)
DNA repair and recombination proteins [BR:
chrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QGN23_11095 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WHF50973
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All DBs
Position
2426931..2430341
Genome browser
AA seq
1136 aa
AA seq
DB search
MQLKNITDTFLPQLLHLGFGKELFMKLDQNKHLAVKSFAGSSPAVFAAELFLIKKKSLLF
LTDDKEDALYITSELEDLLGKENVLYFPPTHLEPYQIEKTQNANLVLRTEVLSRIHNDKK
PKVMIAPFASLAEKVMKKADFKAISHTIKTGDQLDFNFTEELLHQFNFNHTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGNEVESIKTFDIETQLSKEKVKEFQLVSNMNFSAEGT
KVSLFDLAPKDLVVITKNAFVGFNLIKNFYVKAEEKFGTLGTEIRHLTPEQLFVSEEDFV
KGINQFEWIDFTLQEVKGSDAAIVQLNQTPQPGFHKKFELLLEDLQEKQNDGFETWISFS
TEKQKERLESIFEDLSAHKSGSENNETSFDGKTKTLFKSFKSELHEGFVDLDHKISVYTD
HQIFDRYQRFKAKNAFAKSEQITLKDLMQMKVGDYVTHIDHGIGKFMGLVKVNNNGKVQE
CFKLTYKNGDLLYVSIHSLNKISKYNGPDGREIVLSKLGSPAWKALKQKTKAKVKQIAFD
LIRLYAQRKTAKGFAFTPDSYLQNELEASFIYEDTPDQEKATVDVKTDMENDTVMDRLIC
GDVGFGKTEIAIRAAFKAATDGKQVAILVPTTILAFQHYRSFTERLKDFPVTISYMNRFR
TAKQKAETLEGLKSGKIDIVIGTHQLVGSSVKFKDLGLLIIDEEHKFGVAVKDKLKTIKS
NVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQIVGFDEEIIRDAISYELQ
RDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMDGKQLERNVLDFMEGKYDVLVS
TTIIESGVDVPNANTIFINDAQRFGMADIHQMRGRVGRSNRKAFCFLITPPFDMVTNDAR
KRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQ
NDEEFEDLFDNEEDRKKLFKSTKEVNIDTDLELMLPDSYVQSIEERLSLYQKLAEIESKE
ELQKLESELIDRFGALPSEAVNLLKSVELKWIAAEIGFDKIVVKNGVFLGYFPPNPQDKF
YQSEKFRNIISYLSKNPKEATLKEKVSKEGNQLMMRKENVQNVDEVNSVLERILGK
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaatatcaccgatacatttctcccacaacttcttcatttaggatttgga
aaagaactgttcatgaagctcgatcagaataaacatcttgcggtaaaatcatttgccggt
tcttcgcctgcggttttcgcagcggaattatttctaattaaaaagaaatctcttcttttt
ttaacggatgacaaggaagatgcgttgtatatcacttcggaattagaagacttgctgggt
aaagaaaatgtgctttattttccgccgactcatttggaaccttatcagattgaaaaaact
caaaatgcgaatttggttttaagaaccgaagttttaagtagaattcataatgataaaaaa
ccaaaagtgatgatcgcgccgttcgcgtctttggccgagaaagtgatgaaaaaggctgat
ttcaaagcgatttctcatacgatcaaaacgggcgatcagctggattttaattttacggaa
gaattactgcatcagtttaatttcaatcataccgattttgtttccgaacctggcgagttt
tctgtgagaggcggaattgtcgatgttttttcttattccaacgaagagccttaccggatt
acttttttcggaaatgaagtagaaagtattaaaacttttgatatcgaaacgcagctttcc
aaagagaaagtaaaagaattccagttggtttccaatatgaatttttcagccgagggaacg
aaggtttccttgttcgatttggcaccgaaagatttagttgtaattacgaagaacgcgttt
gtcggttttaatttaattaaaaatttctacgtaaaagcagaggaaaagtttggaacatta
ggaactgaaatcagacatctgacgccggaacagctttttgtttctgaagaagatttcgtc
aaaggcatcaatcaatttgaatggatcgattttactttacaggaagtgaagggaagcgac
gcggcaattgtacagctgaatcaaacgccacagccgggttttcataaaaagtttgaatta
ttacttgaggatttacaggaaaagcaaaatgacggttttgaaacctggatttcattttcc
acggaaaagcagaaagaacggcttgagtctatttttgaggatttgtcagcacataaatcg
ggttcggaaaataatgaaacttcctttgacggaaaaaccaagactttattcaaatctttt
aaatcagaacttcacgaaggttttgtggatttggaccataaaatttcagtttacaccgat
caccagatttttgaccgttatcagagatttaaagccaaaaatgcatttgcaaaatctgaa
cagattacgctgaaagatttaatgcagatgaaagttggcgattatgtcacccatatcgat
catggaatcggaaaattcatgggtttggtgaaggtgaataataacggaaaagttcaggaa
tgttttaaactgacttacaaaaatggtgatttgctttatgtgagcattcactccttaaat
aagatttcaaaatataatggtccggacggacgggaaattgtgttgtcgaaactcggttcg
ccagcctggaaagctttaaaacaaaaaacaaaagcgaaagtaaaacagatcgctttcgac
ctgatccgtttatatgcacagcggaaaacggccaagggttttgccttcacgccggattct
tatttgcagaatgaactggaagccagctttatttacgaagatacgcccgatcaggaaaaa
gcaacggtcgatgtgaaaacggacatggaaaatgataccgtaatggaccgtttgatttgt
ggtgatgtaggtttcgggaaaacagaaattgcaattagagcggcatttaaagctgcgact
gacggaaaacaagtggcgattttagttccgaccacgattttggctttccaacattaccgg
agttttaccgaaagattgaaggatttccccgtgaccatttcttatatgaaccgtttccgc
acggcaaaacaaaaagcggaaacactggaaggattgaaatcggggaagatcgatattgtg
atcggaacccatcaattggttgggagcagcgttaaatttaaagatttaggccttttaatt
attgatgaagaacacaagttcggagttgccgttaaagacaaattgaaaacaataaaaagt
aatgtggatactttaacattgacggcgacgccaattccacggactttacagttttcattg
atggcggccagagatttatcagtcattaaaacaccacctccaaaccgtcagcctgttgaa
acacaaattgttggttttgatgaagaaataatccgggatgccatttcttatgaacttcaa
agagatggacaagtttatttcattaataacagaattgaaaacctgaaagatattgcgggc
ttgattcagcgtttggttcccgatgcgaaagtaattacaggccacggacaaatggacggt
aaacaactggaacggaatgttctggattttatggaaggcaaatatgacgttttggtttcg
acgacgattattgaaagtggtgtggatgtgccgaatgcgaatacgattttcattaatgat
gcccagcgttttgggatggcagatattcaccagatgcgcggtcgggtcgggcgaagcaat
cgcaaagctttttgttttctgattacgcctccgtttgatatggtgaccaatgacgcgcgg
aaaagactggaagcgatcgagcagttttcggatttgggaagcggtttccagatcgcgatg
aaggatttggaaattcgtggtgccggggatttgttaggaggtgaacaaagtggttttatt
aatgaaatgggttttgatacttatcagaaaatcatgcaggaagctttggaggaattgcag
aatgatgaggaattcgaagatttatttgataatgaagaagaccgtaaaaaacttttcaaa
tcgaccaaagaagtgaatatcgatacggatttagaactgatgttgccggattcttatgtt
cagagtattgaagaacggttatcactgtatcaaaaattagcagaaatagaaagtaaagaa
gaattgcagaaattagaaagtgaattaatcgaccgtttcggtgctttgccttcggaagct
gtaaatcttctgaaatcggtagaattaaaatggattgccgcggaaattggttttgataaa
atcgtggtgaaaaacggggttttcctcgggtattttccgccaaatcctcaggataaattt
tatcagagtgaaaagttcaggaacattatttcttatttgtcaaagaatccgaaagaagct
actttgaaggaaaaagtcagcaaggaaggaaatcaactcatgatgagaaaagaaaatgta
cagaatgtagatgaggtaaattcggtcttggaaaggattttggggaaataa
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