Chromobacterium phragmitis IIBBL 112-1: DK842_13285
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Entry
DK842_13285 CDS
T05549
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK842_13285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_13285
Enzymes [BR:
chri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK842_13285
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK842_13285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AXE30779
LinkDB
All DBs
Position
complement(2771837..2775229)
Genome browser
AA seq
1130 aa
AA seq
DB search
MDTLPPLPPAGQKTRCGRLPDGLDSHAIAALAKQRRPLLILAADAQAAQRLQAELPFFAP
DLSIALFPDWETLPYDHFSPHGDLVSERLATLWRIRQRECQVVIAPVGTALSRLAPVSYL
LGRTFFLKAGQQLDVEKLRGDMVSAGYQHVTQVMAPGEFSVRGSLIDLYPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEIRMLPAREYPADETGVTAFRQHYREKMEGDPSKSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALVIQHHDVQAAAETFWRDAQGRYD
MARGDVERPVLAPADIFLRPDELMARLKPYARIEFSGEGDIAAALPELAVDRRADAPLHK
LQSFIAAGGRRILLAAESLGRRETMLSFLAEHGVKPTPVDNWADFMAGKTPLALTIAPLY
SGFALADPAIAVVTESELYQHVARSHTRRKTSRASSDAMLRDLAEVKAGDPVVHEAHGIG
RYIGLVAMDLGEGETELMQLEYADGATLYVPVSQLQLISRYAGGATDNIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFELSPADYSAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RFADWPVRIAELSRFKSGKETKQALQGLTDGSVDIVIGTHKLVQPDVEFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVS
PLSNGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLAELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDGYCPDVHERLLIYKRLASC
ETEAEIDDIHEELIDRFGLPPQSVKTLIESHRLRLAAKELGVQKLDASEVAVQITFIKNP
PIDPVKIILLIQSKKNYRLAGQDKLRIEQALPEVAQRIVKVKEVLKELSA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgctaccgcccctgccgcccgccggccagaaaacccgctgcggccgcctgccg
gacggcctggacagccatgccatcgccgcgctggccaagcagcgccgccccttgctgatt
ctcgccgccgacgcccaggcagcgcagcggctgcaagccgagctgccgttcttcgcgccc
gacctgtccatcgcgctgttcccggactgggaaaccctgccttacgaccacttctcgccg
cacggcgacctggtcagcgagcggctggccaccctgtggcggatacgccagcgcgagtgc
caggtggtgatcgcgccggtcggcaccgcgctgagccggctggccccggtaagctatctc
ttgggccgcacgtttttcctgaaagccggccagcaactggatgtggaaaaactgcgcggc
gacatggtgtccgccggctaccagcacgtcacccaggtgatggcgccgggcgaattttcg
gtgcgcggcagcctgatcgatctgtatccgatgggttcgccgctgccctaccgcatcgac
ctgttcgacgccgagatcgacagcctgaagaccttcgatccggacacccagcgcacgctg
tatccagtgcccgagatccgcatgctgccggcgcgcgaatacccggccgacgagaccggc
gtcaccgccttccgccagcattaccgcgagaagatggaaggcgaccctagcaagagccgc
gtctacaaggacgtgtcgcaaggcctgtggccggccggcatcgaatactatctgccgctg
ttcttcgacgaaaccgccaccttgttcgactacgtcggcgacgacgcgctggtgatccag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcaaggccgctacgac
atggcccgcggcgacgtcgagcgcccggtgctggcgccggccgacattttcctgcgcccg
gacgagctgatggccaggctcaagccctacgcccgcatcgaattctccggcgaaggcgac
atcgccgccgcgctgccggagctggccgtggaccgccgcgccgacgcgccactgcataaa
ttgcaaagcttcatcgccgccggcggccgccgcatcctgctggcggcggaaagcctgggc
cgccgcgaaaccatgctgagcttcctggccgaacacggcgtcaagccgacgccggtggac
aactgggccgacttcatggccggcaagacgccgctggcgctgaccatcgccccgctctac
tccggcttcgcgctggccgatccggccatcgccgtggtgaccgagagcgagctgtaccag
cacgtcgcccgcagccacacccgccgcaagaccagccgcgccagctccgacgccatgctg
cgcgacctggccgaggtgaaggccggcgacccagtggtgcacgaggcgcacggcatcggc
cgctacatcggcctggtggccatggacctgggcgagggtgaaaccgaactgatgcagctg
gagtacgccgacggcgccacgctgtacgtgccggtgtcgcagctgcagctgatctcccgc
tacgccggcggcgccaccgacaacatccagctacacaagctgggcaacccggcctgggaa
aaggccaagaagcgcgcggcggaaaaagcgcgcgacaccgccgccgagctgctgaacctg
tacgcccagcgcgccgcgcgcgagggccacagcttcgagctgtcccccgccgactacagc
gccttcgccgccggcttcggcttcgaggagacgccggaccaggccaccgccatcgaagcg
gtgatccaggacatgtgctccggcaagccgatggaccggctggtctgcggcgacgtcggc
ttcggcaaaacggaagtggcgctgcgcgccgccttcgtcgcggtgatgggcggcaagcaa
gtggcggtgctggtgcccaccacgctcttggccgaacagcacttccagaacttctccgac
cgcttcgccgactggccggtgcgcatcgccgagctgtcgcgcttcaagagcggcaaggaa
acgaagcaagccttgcaagggctgaccgacggcagcgtcgacatcgtcatcggcacccac
aagctggtgcagccggatgttgagttcaagaacctgggcctggtcatcatcgacgaagaa
caccgcttcggcgtgcggcagaaggagcagctgaaacggctgcgcgccaatgtggacgtg
ctgacgctgaccgcgacgccgattccgcgcacgctgtcgatggcgctggaaggcctgcgc
gacttctccgccatcgccaccgcccccagccgccgactggcggtgaaaaccttcgtcagc
cccttgagcaacggcgtgatccgcgaggcggtattgcgcgagctgaagcgcggcggccag
gtgttcttcctgcacaatgaagtcgacaccatagaaaacatgcgcgaaaagctggccgag
ctgatcccggaggcgcgcatcggcgtcgcccacggccagctgcgcgagcgcgagctggag
caggtgatgcgcgacttcctgcagcagcgcttcaacctgctgttgtgctccaccatcatc
gaaaccggcatcgacatccccaatgccaacaccatcctgatcaaccgcgccgacaagttc
ggcctggcccagctgcatcaactgcgcggccgcgtcggccgttcgcaccaccaggcctac
gcctatctgctgacgccggacggcatgacccgcgacgcgcagaagcggctggaggccatc
cagctgtccggcgagctgggcgcgggcttttacctggcgatgcacgacctggaaatccgc
ggcgccggcgaagtcctgggcgaaggccagtccggcgagatgcaggaagtgggcttcagc
ctgttcaccgagatgctgaagcaggcggtgcgcgatctgaaaaagggccgcgcgccggac
ctggacgcgccgcttggcgtcaccaccgagatcaatctgcacagcccggcgctgctgccg
gacggctattgcccggacgtgcacgagcggctgctgatctacaagcggctggccagttgc
gagaccgaagcggagatcgacgacatccacgaagagctgatcgaccgcttcggcctgccg
ccgcaaagcgtgaagacgctgatcgaaagccatcgtctgcgcttggcggccaaggagctg
ggggtgcaaaagctggacgccagcgaggtggcggtacagatcaccttcatcaagaacccg
cctatcgatccggtgaagatcatcctgctgatccagagcaagaagaactaccgcctggcc
ggacaggacaagctgcgcatcgagcaggcgctgccggaggtggcgcagcggatcgtgaag
gtgaaggaggtgttgaaggagttgagcgcgtag
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integrated database retrieval system
